PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00125625001
Common NameGSBRNA2T00125625001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family NAC
Protein Properties Length: 366aa    MW: 41907.6 Da    PI: 5.4241
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00125625001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM75.81e-2371375128
                  NAM   5 frFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknra......tksgyWkat 86 
                          ++F+P d++lv +yL+++v++ k     +i+++++y+ ePw Lp   + + +e+ w++F+ r ++   g+r++r+       + g+W ++
  GSBRNA2T00125625001   7 LKFSPIDQNLVGYYLRNRVDTGKD---GFITDIKLYEDEPWLLPhVkNDQFKENMWFYFVLRTRNL--GSRPKRTvpgrgsSNGGTWTTS 91 
                          79*******************994...45***************42233337889******99975..7788886566666779****** PP

                  NAM  87 gkdkevlsk..kgelvglkktLvfykg..rapkgektdWvmheyrl 128
                          g +k+++++   + ++g k+ L+++k+   + kg  t W+m ey l
  GSBRNA2T00125625001  92 GVKKAITDRnnPKVVIGYKTELAYHKKvkGKLKGDTTGWCMTEYWL 137
                          ********85455669*********7533677899*********87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100531.1373156IPR003441NAC domain
SuperFamilySSF1019418.76E-264152IPR003441NAC domain
PfamPF023657.7E-146136IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 366 aa     Download sequence    Send to blast
MAHPRDLKFS PIDQNLVGYY LRNRVDTGKD GFITDIKLYE DEPWLLPHVK NDQFKENMWF  60
YFVLRTRNLG SRPKRTVPGR GSSNGGTWTT SGVKKAITDR NNPKVVIGYK TELAYHKKVK  120
GKLKGDTTGW CMTEYWLASE NDAQFQEVVL CHPRDNNKIV VAQSPERKNG DNGIVPEQPQ  180
QENSDDNNNM FDNNRLLEQR PLIPPFEADD SRFSVQYMTP SGEGQGLGLQ TIMGYSDKAT  240
QEQQHPPISL PPQRQDSGRI NNALVIMEDE CVNQDEIFNL ADLEAGITHP QQQHRQMMMD  300
PYDDISFSRL AMPNNLIYFQ DSWHQDTSPW NNTITTNPRG LIFNTHGYDI QDQTVTKGVN  360
QDSYY*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.252961e-156flower
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00125625001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013700260.10.0uncharacterized protein LOC106404048
TrEMBLA0A078F5F90.0A0A078F5F9_BRANA; BnaA05g13300D protein
STRINGBra037078.1-P1e-138(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM145441119
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G03490.18e-14NAC domain containing protein 6
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]