PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00125657001

Common Name

GSBRNA2T00125657001, LOC106384858

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

bHLH

Protein Properties

Length: 293aa MW: 32656.5 Da PI: 5.1327

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00125657001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	29.8	1.1e-09	141	188	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+++Er RR++i ++ L++l+P + ++ Ka +L + ++Y+ sLq GSBRNA2T00125657001 141 SHSIAERARREKISARMKLLQDLVPGC----NRITGKAVMLDEIINYVESLQ 188 8************************....9*****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	4.32E-16	135	204	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.39E-9	135	192	No hit	No description
PROSITE profile	PS50888	14.932	137	187	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.2E-16	137	206	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	5.9E-7	141	188	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	3.6E-9	143	193	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 293 aa Download sequence Send to blast
MDKETEENLN CLLPFGDGND AMMISDFVGR FCDTQEFPVG FPYLGHFGHS QVQESNKSSL 60 LDPGSVSGTG KTRPNSRKRK ESPASSSLTA SNSKMQEENN AAVAGKQNET EKSENKDEEK 120 PSEPYKDYIH VRARRGQATD SHSIAERARR EKISARMKLL QDLVPGCNRI TGKAVMLDEI 180 INYVESLQRQ VQFLSMKLAT INPRTEFNAA NAMLSAEMLQ LGESLSCSES RFPSEYLAVG 240 KNILSEGFVQ AEAPAFWEND LQSIVHMGFR DYQQQSINCS EPTVQMKIEP ER*

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. {ECO:0000269\|PubMed:12679534}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00125657001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013680223.1	0.0	transcription factor bHLH77 isoform X1
Refseq	XP_013680224.1	0.0	transcription factor bHLH77 isoform X1
Swissprot	Q9LK48	1e-115	BH077_ARATH; Transcription factor bHLH77
TrEMBL	A0A078F962	0.0	A0A078F962_BRANA; BnaA05g13110D protein
STRING	Bra037059.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM7406	20	39

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G23690.1	1e-108	bHLH family protein

Link Out ? help Back to Top
Entrez Gene	106384858

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]