PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00125806001
Common NameGSBRNA2T00125806001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family NAC
Protein Properties Length: 236aa    MW: 27381.2 Da    PI: 5.1316
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00125806001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM39.51.7e-12841826114
                  NAM   6 rFhPtdeelvveyLkkkvegkkleleevikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 
                          +F+P+d+ + ++yLk+kv g+++++  + +e+ +i+++ P+d+p+    +e+ew+ +++r +       ++r      W   g+d+ v++
  GSBRNA2T00125806001  84 KFRPSDDMMAKYYLKNKVLGQPMKALIIPEECdHIFSIPPRDFPRY--PRETEWHCYCRRPNGP-----ESR----NLWTRVGEDTIVFD 162
                          8************************877788866**********43..4789******986642.....344....37************ PP

                  NAM  95 kkgelvglkktLvfykgrap 114
                           +g+ vg+k+t ++ +++++
  GSBRNA2T00125806001 163 PRGNGVGIKRTYALTEQKEE 182
                          ***********999965443 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100517.4979223IPR003441NAC domain
PfamPF023653.6E-684204IPR003441NAC domain
SuperFamilySSF1019411.1E-1584222IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 236 aa     Download sequence    Send to blast
MADKKYLDPN PPLENRTVRS FKRIAIEQDS ESEPEFKKQN LKELQTDECN ITHKAHTSAK  60
IDDKVKTDPK MVEPFIKAFS TLKKFRPSDD MMAKYYLKNK VLGQPMKALI IPEECDHIFS  120
IPPRDFPRYP RETEWHCYCR RPNGPESRNL WTRVGEDTIV FDPRGNGVGI KRTYALTEQK  180
EEPDVISLPG EIEPPREEWF IEEISLPLSV ADTDLVFCHL ILNKIDKEEA YVVDD*
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00125806001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013589340.11e-101PREDICTED: uncharacterized protein LOC106297688
TrEMBLA0A3N6RUN21e-159A0A3N6RUN2_BRACR; Uncharacterized protein
STRINGBo1g071020.11e-146(Brassica oleracea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56520.17e-42NAC family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]