PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00126137001
Common NameGSBRNA2T00126137001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family LBD
Protein Properties Length: 195aa    MW: 21884.8 Da    PI: 8.7723
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00126137001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26024.48e-08224123
               DUF260  1 aCaaCkvlrrkCakdCvlapyfp 23
                         +C++C+vlr++C+++C+l+p+  
  GSBRNA2T00126137001  2 SCNGCRVLRKGCSENCILRPCVQ 24
                         6********************84 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031959.2E-5224IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 195 aa     Download sequence    Send to blast
MSCNGCRVLR KGCSENCILR PCVQWIESAE AKATPPSSSL NSSAVPVNVL HLRRTGISMP  60
CFIPVFALRS LWENCESGER RRRVVVDGEL EYLSSGGDRK NYHHCRFSTS RSPPKWKRLA  120
SEQQQRRPPS ELDLSLIPTF PIQTTAFKEE TRRPETPSMY SEESVTTTTF PDSTAGERFV  180
RVGGETTKLL NLFT*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in young shoots, roots, stems, leaves and flowers. {ECO:0000269|PubMed:12068116}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00126137001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4738731e-105AB473873.1 Arabidopsis thaliana ASL40 mRNA for ASYMMETRIC LEAVES2-like 40 protein, complete cds.
GenBankAY0857611e-105AY085761.1 Arabidopsis thaliana clone 17840 mRNA, complete sequence.
GenBankBT0024491e-105BT002449.1 Arabidopsis thaliana putative protein (At3g49940) mRNA, complete cds.
GenBankBT0062871e-105BT006287.1 Arabidopsis thaliana At3g49940 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013603164.18e-45PREDICTED: LOB domain-containing protein 38-like
RefseqXP_013691392.18e-45LOB domain-containing protein 38-like
SwissprotQ9SN233e-27LBD38_ARATH; LOB domain-containing protein 38
TrEMBLA0A3P6G1Z81e-140A0A3P6G1Z8_BRAOL; Uncharacterized protein
STRINGBo1g081370.11e-114(Brassica oleracea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49940.11e-29LOB domain-containing protein 38
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]