PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00126145001
Common NameGSBRNA2T00126145001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family MYB
Protein Properties Length: 315aa    MW: 34855.8 Da    PI: 7.62
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00126145001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.62.5e-174691147
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                         +g+W++eEde+l + v+ +G+++W  +++ ++ gR++k+c++rw + 
  GSBRNA2T00126145001 46 KGPWSQEEDEQLRRMVEHYGPRNWLEVSKSVP-GRSGKSCRLRWCNQ 91
                         79******************************.***********985 PP
2Myb_DNA-binding48.12.8e-15100142347
                          SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                          +++ eEd+ +v a + +G++ W+tIar ++ gRt++ +k++w++ 
  GSBRNA2T00126145001 100 PFSSEEDKTIVSARATFGNK-WATIARLLN-GRTDNAVKNHWNST 142
                          79******************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129426.2854196IPR017930Myb domain
SuperFamilySSF466892.77E-2943139IPR009057Homeodomain-like
SMARTSM007171.6E-164594IPR001005SANT/Myb domain
PfamPF002493.9E-174691IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.6E-234799IPR009057Homeodomain-like
CDDcd001671.12E-154890No hitNo description
SMARTSM007171.6E-1297145IPR001005SANT/Myb domain
PROSITE profilePS5129416.48198147IPR017930Myb domain
CDDcd001677.22E-10100143No hitNo description
PfamPF002491.4E-12100142IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.6E-20100146IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 315 aa     Download sequence    Send to blast
MEEAGAMTFS TVSTGYQLYF PFLYINDLSF FLVSTILLDS MADRAKGPWS QEEDEQLRRM  60
VEHYGPRNWL EVSKSVPGRS GKSCRLRWCN QLSPVVEHRP FSSEEDKTIV SARATFGNKW  120
ATIARLLNGR TDNAVKNHWN STLKRKYLGG GGDGNLIVMT TEDQDRRKKR RSVRSESATP  180
VDTGLYMSPE SPTGIPPPPS PPSPVDAQLL KPMAMPSPAE MSSVEEDPTA QELKPHNSLL  240
FPRFGSQMKI NVEERGEALV GHKAEFLTVV QEMIKVEVRS YMAEMQKKIA VVAVVNSSSE  300
VSMMPATAVS GIVG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A6e-35431464107B-MYB
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.46950.0seed
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed in leaves from the third leaf to rosette leaves from six-week old plants. Expression follows a development-dependent gradient in successive leaves. {ECO:0000269|PubMed:9678577}.
UniprotTISSUE SPECIFICITY: Expressed in roots, stems and flowers. Expressed in dry seeds (PubMed:9678577). Expressed in root vasculature, root tips and lateral root (PubMed:17675404). {ECO:0000269|PubMed:17675404, ECO:0000269|PubMed:9678577}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in auxin response. Functions in auxin signal transduction and modulates lateral root growth. Interacts with ARF response factors to promote auxin-responsive gene expression (PubMed:17675404). In response to auxin, binds sequence-specific motifs in the promoter of the auxin-responsive gene IAA19, and activates IAA19 transcription. The IAA19 transcription activation by MYB77 is enhanced by direct interaction between MYB77 and PYL8 (PubMed:24894996). {ECO:0000269|PubMed:17675404, ECO:0000269|PubMed:24894996}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00126145001
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by auxin (PubMed:17675404). Down-regulated by potassium deprivation (PubMed:15173595). {ECO:0000269|PubMed:15173595, ECO:0000269|PubMed:17675404}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013699118.20.0transcription factor MYB44-like
SwissprotQ9SN121e-105MYB77_ARATH; Transcription factor MYB77
TrEMBLA0A0D3A9M10.0A0A0D3A9M1_BRAOL; Uncharacterized protein
STRINGBo1g082480.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM135981527
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50060.12e-96myb domain protein 77
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]