PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00126210001

Common Name

GSBRNA2T00126210001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

NAC

Protein Properties

Length: 238aa MW: 27395.8 Da PI: 9.2813

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00126210001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	109.3	4.4e-34	37	165	2	128
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleev.ikevdiykvePwdLpkkvka.eekewyfFskrdkkyatgkrknr.atksgyWkatgk 88 ppG+rF Ptd e++ +yLk+ ++k + + i++++iy+++P++L +++k+ + +ew+f s+r k +++g++++r + gyW+++ GSBRNA2T00126210001 37 PPGYRFVPTDAEIIYYYLKPFSPDNKKSWPNLpIHHANIYESNPQQLTAEYKKgNLTEWFFISERTKIKTNGQKQKRvDHNGGYWHSKAV 126 9******************999998887777**********9655551556****************76789**** PP NAM 89 dkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 +k++++ k+ +vg k+tL ++ g++p+ge+t+W+m+ey l GSBRNA2T00126210001 127 TKKIKV-KKDVVGYKTTLNYFVGKQPNGERTNWLMQEYWL 165 **.8999*************************87 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.83E-41	28	187	IPR003441	NAC domain
PROSITE profile	PS51005	38.213	36	187	IPR003441	NAC domain
Pfam	PF02365	1.5E-18	37	164	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 238 aa Download sequence Send to blast
MTPQRSKRSE TPQPSPQHEP NMQSSSSSSA SSSLAYPPGY RFVPTDAEII YYYLKPFSPD 60 NKKSWPNLPI HHANIYESNP QQLTAEYKKG NLTEWFFISE RTKIKTNGQK QKRVDHNGGY 120 WHSKAVTKKI KVKKDVVGYK TTLNYFVGKQ PNGERTNWLM QEYWLESSGH NNTVCIVDYA 180 LCKIYLSPTA QKNMKEEDVE EVEEEAVQPR TVEIQQPQPP QFYPTPLNRT NHSLLIL*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	2e-21	32	185	13	163	NO APICAL MERISTEM PROTEIN
1ut4_B	2e-21	32	185	13	163	NO APICAL MERISTEM PROTEIN
1ut7_A	2e-21	32	185	13	163	NO APICAL MERISTEM PROTEIN
1ut7_B	2e-21	32	185	13	163	NO APICAL MERISTEM PROTEIN
3swm_A	2e-21	32	185	16	166	NAC domain-containing protein 19
3swm_B	2e-21	32	185	16	166	NAC domain-containing protein 19
3swm_C	2e-21	32	185	16	166	NAC domain-containing protein 19
3swm_D	2e-21	32	185	16	166	NAC domain-containing protein 19
3swp_A	2e-21	32	185	16	166	NAC domain-containing protein 19
3swp_B	2e-21	32	185	16	166	NAC domain-containing protein 19
3swp_C	2e-21	32	185	16	166	NAC domain-containing protein 19
3swp_D	2e-21	32	185	16	166	NAC domain-containing protein 19
4dul_A	2e-21	32	185	13	163	NAC domain-containing protein 19
4dul_B	2e-21	32	185	13	163	NAC domain-containing protein 19
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00126210001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018513809.1	1e-128	PREDICTED: NAC domain-containing protein 41-like
TrEMBL	A0A3P6BXS7	1e-164	A0A3P6BXS7_BRACM; Uncharacterized protein
STRING	fgenesh2_kg.5__2087__AT3G56530.1	8e-67	(Arabidopsis lyrata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2793	15	63

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G56530.1	2e-54	NAC domain containing protein 64

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]