PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00126222001
Common NameGSBRNA2T00126222001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family bZIP
Protein Properties Length: 439aa    MW: 48780.2 Da    PI: 6.2862
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00126222001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_143.38e-1471129260
                          XXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
               bZIP_1   2 kelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklk 60 
                           + kr  r+ +NRe+A  sRqR+k ++eeLe+kvk+L++  ++L ++++    e a+l+
  GSBRNA2T00126222001  71 DDEKRDARLVRNRESALLSRQRRKHYVEELEDKVKSLQSVITDLNSKVSYFMSENASLR 129
                          5679********************************************99999999886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003381.8E-1270134IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.08272129IPR004827Basic-leucine zipper domain
PfamPF001706.7E-1273130IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1702.5E-1474129No hitNo description
SuperFamilySSF579593.38E-1174129No hitNo description
CDDcd147044.77E-1875126No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0016021Cellular Componentintegral component of membrane
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 439 aa     Download sequence    Send to blast
MAEPAVDSFY NSSFEIENSI SDLDVDFELT FDDLYFPSEN ESFFIPVDVE EEATTTCKTS  60
MTKRKKEIEE DDEKRDARLV RNRESALLSR QRRKHYVEEL EDKVKSLQSV ITDLNSKVSY  120
FMSENASLRL TVGPGKGMCW PPLVPWMPYL GSHQVVPLLP IPRLKPQRPV AKVKKTKKVA  180
SVSVLGLLFC LFLFGALVPI IVNVSYGGRV LDVSVNSSSG RGNLSATENY VPLGNGSELL  240
GASLFVPRNE KLVKLDGNLI IHSILASEED TASDSTRTRD MSKYLNTEKR KTDDSKEKLN  300
STRTNGEVQQ WFREGVAGPM FSSGMCTEVF QFDVSSTSGA TFPTSPATQQ HKGKNNRRIL  360
RGGHPLSNLN LSKDQNSSNK ENSSTNKSFP SMVVSVLIDP REESSDGVFI VVLVDNVKYV  420
TYSCVLPRPE EVPHLVTT*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18092RNRESALLSRQRR
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator involved in stress responses. {ECO:0000250|UniProtKB:O22208}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00126222001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009139087.10.0PREDICTED: bZIP transcription factor 49
SwissprotQ9LXX41e-128BZP49_ARATH; bZIP transcription factor 49
TrEMBLM4DDW10.0M4DDW1_BRARP; Uncharacterized protein
STRINGBra014680.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2027756
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56660.11e-105basic region/leucine zipper motif protein 49
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]