PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00126439001

Common Name

GSBRNA2T00126439001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

SRS

Protein Properties

Length: 202aa MW: 22303.1 Da PI: 9.6386

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00126439001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	132	6.3e-41	35	161	4	139
DUF702 4 gtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrelkskkqsalsstklss 93 ++ C+dCGn+akk+C++eRCRtCCksrg++CathvkstW+p++ +++++ ++ +++++k+ + ++s+k + l +++s GSBRNA2T00126439001 35 EEKVCRDCGNRAKKECSFERCRTCCKSRGYKCATHVKSTWIPSSSSSHHHHSPSS---------DRNRKKKLKIDSSNKPTVLIVPTTTS 115 6789*************************************999886332222.........33344455555556666666666666 PP DUF702 94 aeskkeletsslPeevsseavfrcvrvssvdd.geeelaYqtavsig 139 +++++ lP +++++avf+++rv+++++ ++ e++Yq++v+i GSBRNA2T00126439001 116 RRQERSFREG-LPGKIEAPAVFKRTRVTAISNeEQSEIGYQATVTIH 161 6655555544.***************9857789******95 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05142	6.6E-36	37	161	IPR007818	Protein of unknown function DUF702
TIGRFAMs	TIGR01623	1.1E-25	38	78	IPR006510	Zinc finger, lateral root primordium type 1
TIGRFAMs	TIGR01624	1.3E-15	126	160	IPR006511	Lateral Root Primordium type 1, C-terminal

Sequence ? help Back to Top
Protein Sequence Length: 202 aa Download sequence Send to blast
MLGLRNIILL PPPSQIIHPS VEDNNNNKAR NSNVEEKVCR DCGNRAKKEC SFERCRTCCK 60 SRGYKCATHV KSTWIPSSSS SHHHHSPSSD RNRKKKLKID SSNKPTVLIV PTTTSRRQER 120 SFREGLPGKI EAPAVFKRTR VTAISNEEQS EIGYQATVTI HDGVRLCYGG ANRATVEARN 180 LASSEAVETD SGSCWSVVEV P*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Bna.15897	1e-146	seed

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influences vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM) (By similarity). {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00126439001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009139241.1	6e-95	PREDICTED: protein SHI RELATED SEQUENCE 6
Swissprot	Q9M2U4	2e-70	SRS6_ARATH; Protein SHI RELATED SEQUENCE 6
TrEMBL	M4DE97	1e-124	M4DE97_BRARP; Uncharacterized protein
STRING	Bra014818.1-P	1e-125	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM11959	23	32

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G54430.1	1e-70	SHI-related sequence 6

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293] Estornell LH,Landberg K,Cierlik I,Sundberg E SHI/STY Genes Affect Pre- and Post-meiotic Anther Processes in Auxin Sensing Domains in Arabidopsis. Front Plant Sci, 2018. 9: p. 150 [PMID:29491878]