PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00126493001
Common NameGSBRNA2T00126493001, LOC106449421
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C2H2
Protein Properties Length: 140aa    MW: 16119 Da    PI: 8.463
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00126493001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.70.000192042123
                         EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                         y C  C + Fs+   L  H++ H
  GSBRNA2T00126493001 20 YICDFCERGFSNAQALGGHMNIH 42
                         89*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.8E-71746No hitNo description
Gene3DG3DSA:3.30.160.603.3E-61844IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.1772047IPR007087Zinc finger, C2H2
PROSITE patternPS0002802242IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 140 aa     Download sequence    Send to blast
MSRKYSDRRS YSWSGQARPY ICDFCERGFS NAQALGGHMN IHRKDRAKLR QANLKEDDRE  60
DSTCTTSRNR LEQDLIELPF FVDTVSSSTK QDKNTSGDYL RDEEEKKMRM LQKALSQSAE  120
VIDLELRLGL DPYKKSPST*
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00126493001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009139289.11e-100PREDICTED: transcriptional regulator TAC1-like
RefseqXP_013746638.11e-100transcriptional regulator TAC1
TrEMBLA0A397ZI355e-99A0A397ZI35_BRACM; Uncharacterized protein
TrEMBLM4DEE05e-99M4DEE0_BRARP; Uncharacterized protein
STRINGBra014861.1-P1e-100(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM69912341
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G53820.15e-78C2H2 family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]