PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00126809001
Common NameGSBRNA2T00126809001, LOC106359739
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family Dof
Protein Properties Length: 264aa    MW: 30071.1 Da    PI: 8.2817
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00126809001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof106.11.9e-332177561
               zf-Dof  5 alkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61
                          + cprC+stntkfCyynn+s+sqPry Ck+Crr Wt+GGalrn+P+Gg+ rk+k++
  GSBRNA2T00126809001 21 PRVCPRCNSTNTKFCYYNNHSVSQPRYKCKECRRNWTHGGALRNIPIGGSGRKKKST 77
                         678***************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074783.0E-201675IPR003851Zinc finger, Dof-type
PfamPF027011.7E-302276IPR003851Zinc finger, Dof-type
PROSITE profilePS5088426.2542276IPR003851Zinc finger, Dof-type
PROSITE patternPS0136102460IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 264 aa     Download sequence    Send to blast
MDYSSVLAEG GNEVNQEKPP PRVCPRCNST NTKFCYYNNH SVSQPRYKCK ECRRNWTHGG  60
ALRNIPIGGS GRKKKSTMID QPFVSQAVSA EIQQVSRRRQ PFLHAQKTNQ FVEYFGGSSY  120
GFDVDNHVGS FPKICGDGVL PFQSFPPMDR SYFHDGLFQQ DYYNVESNDL IGNHLNNQSI  180
GNHLINTSIG SYNVVSSNHN SYINQEHRDK WNQSLNNTMN MNHNASTSGS REWWDTDHMN  240
NYNGNIKKNC VYESSYHLEK HGP*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.51040.0seed
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00126809001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013654838.10.0dof zinc finger protein DOF4.3
SwissprotQ9SUA94e-54DOF44_ARATH; Dof zinc finger protein DOF4.4
TrEMBLA0A397YA570.0A0A397YA57_BRACM; Uncharacterized protein
STRINGBo3g162810.11e-178(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16021789
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G21050.12e-56Dof-type zinc finger domain-containing protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]