PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00126814001

Common Name

GSBRNA2T00020469001, GSBRNA2T00020472001, GSBRNA2T00126814001, GSBRNA2T00126815001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

Dof

Protein Properties

Length: 78aa MW: 8763.1 Da PI: 10.6745

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00126814001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	100.5	1.1e-31	21	76	5	60
zf-Dof 5 alkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkk 60 + cprC+s+ntkfCyy n slsqPry Ck+C r Wt+G alrn+P+G+g rk k+ GSBRNA2T00126814001 21 PRICPRCNSDNTKFCYYTNSSLSQPRYICKNCLRLWTHGKALRNIPIGSGGRKTKR 76 567**************************************************996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	3.0E-19	19	76	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	24.642	22	76	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	7.3E-28	23	76	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 78 aa Download sequence Send to blast
MNTSHVFVSA NHQVNGEKPP PRICPRCNSD NTKFCYYTNS SLSQPRYICK NCLRLWTHGK 60 ALRNIPIGSG GRKTKRI*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Bna.11231	1e-123	seed

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00126814001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006413832.1	1e-36	dof zinc finger protein DOF4.4
Swissprot	Q9SUA9	4e-30	DOF44_ARATH; Dof zinc finger protein DOF4.4
TrEMBL	A0A078CGR7	1e-50	A0A078CGR7_BRANA; BnaC03g64450D protein
TrEMBL	A0A397YA53	1e-50	A0A397YA53_BRACM; Uncharacterized protein
TrEMBL	A0A3P6BKN8	1e-50	A0A3P6BKN8_BRAOL; Uncharacterized protein
TrEMBL	M4DWI6	1e-50	M4DWI6_BRARP; Uncharacterized protein
STRING	Bra020880.1-P	2e-51	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM21512	2	5

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G21050.1	1e-32	Dof-type zinc finger domain-containing protein

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]