PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00126994001
Common NameGSBRNA2T00126994001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family MYB
Protein Properties Length: 365aa    MW: 40949.1 Da    PI: 6.5972
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00126994001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding482.9e-151562148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                         +g+W +eEd++l  ++++ G g+W++ ++  g++R++k+c++rw +yl
  GSBRNA2T00126994001 15 KGPWMPEEDDKLRAYINKKGYGNWRSLPKLAGLNRCGKSCRLRWMNYL 62
                         79********************************************97 PP
2Myb_DNA-binding55.41.4e-1768113148
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                          rg ++ eE+  +v+++++lG++ W++Ia++++ gRt++++k++w++++
  GSBRNA2T00126994001  68 RGEFSDEEESNIVRLHALLGNK-WSKIASHLP-GRTDNEIKNYWNTHM 113
                          899*******************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.7861062IPR017930Myb domain
SuperFamilySSF466893.37E-2912109IPR009057Homeodomain-like
SMARTSM007172.9E-111464IPR001005SANT/Myb domain
PfamPF002494.5E-141562IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.2E-221669IPR009057Homeodomain-like
CDDcd001671.26E-91762No hitNo description
PROSITE profilePS5129426.93563117IPR017930Myb domain
SMARTSM007171.0E-1667115IPR001005SANT/Myb domain
PfamPF002496.9E-1668112IPR001005SANT/Myb domain
CDDcd001679.54E-1370113No hitNo description
Gene3DG3DSA:1.10.10.601.3E-2670117IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 365 aa     Download sequence    Send to blast
MGRSPCCDQD KDVKKGPWMP EEDDKLRAYI NKKGYGNWRS LPKLAGLNRC GKSCRLRWMN  60
YLRPDIRRGE FSDEEESNIV RLHALLGNKW SKIASHLPGR TDNEIKNYWN THMRKKMLQM  120
RIDPTTHEPR TNDLTPILDV SQMLAAAFSN GQFGNSNLFN NNTALENHLK LQLIHKMLQM  180
ITPKAVPNIN SFCTNSLIPK HEPVVNDFNT NSVNPKPEPG AGQLNAIGGQ QVFINKSDNE  240
DFMPSFGHDW DGFEDNQLPG LVTVSQENLK SAKPGTNTTT EVNYKTGPDM MPGYCGDQLR  300
EIPSTGLISV SPETSGLKYR GTTQHSSASD VLEDWEKFLD DETSDSCWKS FLDLTSPTSS  360
PCPL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-25121174108B-MYB
1gv2_A2e-25151174105MYB PROTO-ONCOGENE PROTEIN
1mse_C2e-25151174105C-Myb DNA-Binding Domain
1msf_C2e-25151174105C-Myb DNA-Binding Domain
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00126994001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009108343.10.0PREDICTED: transcription factor MYB39-like
SwissprotQ8GWP00.0MYB39_ARATH; Transcription factor MYB39
TrEMBLA0A3P6BN330.0A0A3P6BN33_BRACM; Uncharacterized protein
STRINGBra021033.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM122431730
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17785.10.0myb domain protein 39
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]