PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00127023001

Common Name

GSBRNA2T00127023001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

Trihelix

Protein Properties

Length: 150aa MW: 16389.6 Da PI: 10.5947

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00127023001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	39.2	1.9e-12	49	116	20	86
trihelix 20 rlrrgklkkplWeevskkm.rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 +lrrg+l++++W++v++ + +g ++++qC++k+e+l+kry+ +k++ + + ss++ +f l+ GSBRNA2T00127023001 49 ALRRGNLRAADWDDVAASLpTFGGPAKTAIQCRHKIEKLRKRYRGEKQRCLTKPGKFSSSWDLFPVLD 116 6799*************6667889*******************9999899999**99887 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	8.4E-13	52	118	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 150 aa Download sequence Send to blast
MNPPSPPPSI LPPPSPSRPP LPGESRLRAG PTRRPPRSSM PTKTSGSFAL RRGNLRAADW 60 DDVAASLPTF GGPAKTAIQC RHKIEKLRKR YRGEKQRCLT KPGKFSSSWD LFPVLDAMEL 120 ASVTSTAVEP NDQDVDRENE SNGVDEFRV*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00127023001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009108291.1	1e-101	PREDICTED: uncharacterized protein LOC103833990 isoform X1
Refseq	XP_018509389.1	1e-101	PREDICTED: uncharacterized protein LOC103833990 isoform X1
Refseq	XP_018509390.1	1e-101	PREDICTED: uncharacterized protein LOC103833990 isoform X1
Refseq	XP_018509391.1	1e-101	PREDICTED: uncharacterized protein LOC103833990 isoform X1
TrEMBL	A0A3P6C2W8	1e-100	A0A3P6C2W8_BRACM; Uncharacterized protein (Fragment)
TrEMBL	M4DX26	1e-100	M4DX26_BRARP; Uncharacterized protein
STRING	Bra021072.1-P	1e-100	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM10483	18	28

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G44730.1	1e-16	Trihelix family protein

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]