PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00127050001
Common NameGSBRNA2T00127050001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family NAC
Protein Properties Length: 333aa    MW: 38092 Da    PI: 6.0508
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00127050001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM165.71.7e-51111391128
                  NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvka.eekewyfFskrdkkyatgkrknratksgyWkatg 87 
                          +ppGfrFhPt+eel+++yL+kk+++ k++l +vi++vd++k+ePwd+++  k+ +  +++wyfFs++dkky+tg+r+nrat+ g+Wkatg
  GSBRNA2T00127050001  11 VPPGFRFHPTEEELLQYYLRKKISNIKIDL-DVIRDVDLNKLEPWDIQEmcKIGTtPQNDWYFFSHKDKKYPTGTRTNRATTVGFWKATG 99 
                          69****************************.9***************962433332455******************************* PP

                  NAM  88 kdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                          +dk ++s +g  +g++ktLvfykgrap+g+k+dW+mheyrl
  GSBRNA2T00127050001 100 RDKIIYS-NGDRIGMRKTLVFYKGRAPHGQKSDWIMHEYRL 139
                          *******.9999***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019417.85E-578176IPR003441NAC domain
PROSITE profilePS5100554.88511176IPR003441NAC domain
PfamPF023651.2E-2712139IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 333 aa     Download sequence    Send to blast
MNISVNGQSQ VPPGFRFHPT EEELLQYYLR KKISNIKIDL DVIRDVDLNK LEPWDIQEMC  60
KIGTTPQNDW YFFSHKDKKY PTGTRTNRAT TVGFWKATGR DKIIYSNGDR IGMRKTLVFY  120
KGRAPHGQKS DWIMHEYRLD DNLLVSSSHL DDDVTLETCE VIGGDEGWVV CRVFMKKSLC  180
KTVNSSPPRS IKTPSFNEET IGHFLEVMEQ SCKEETILDP FLKLPNLECP NTVASYQRLM  240
DDQVSNCHVS KLVDPITSWA SLDRLVASQL NGPNSYYEIP QSPFHGLNRP GYFNTGLTPD  300
YYIPEMDVWN DTDFGRTTPS SNELRHMSNI SG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A1e-46817814167NO APICAL MERISTEM PROTEIN
1ut4_B1e-46817814167NO APICAL MERISTEM PROTEIN
1ut7_A1e-46817814167NO APICAL MERISTEM PROTEIN
1ut7_B1e-46817814167NO APICAL MERISTEM PROTEIN
3swm_A9e-47817817170NAC domain-containing protein 19
3swm_B9e-47817817170NAC domain-containing protein 19
3swm_C9e-47817817170NAC domain-containing protein 19
3swm_D9e-47817817170NAC domain-containing protein 19
3swp_A9e-47817817170NAC domain-containing protein 19
3swp_B9e-47817817170NAC domain-containing protein 19
3swp_C9e-47817817170NAC domain-containing protein 19
3swp_D9e-47817817170NAC domain-containing protein 19
4dul_A1e-46817814167NAC domain-containing protein 19
4dul_B1e-46817814167NAC domain-containing protein 19
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Mostly expressed in anthers. Also present in pollen, base of siliques and inflorescence stems. {ECO:0000269|PubMed:16214898}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator of genes involved in biosynthesis of secondary walls. Together with NST1, required for the secondary cell wall thickening of the anther endocethium, which is necessary for anther dehiscence. May also regulate the secondary cell wall lignification of other tissues such as tracheary elements. {ECO:0000269|PubMed:16214898}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00127050001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013710674.10.0NAC domain-containing protein 66-like
SwissprotQ9M2740.0NAC66_ARATH; NAC domain-containing protein 66
TrEMBLA0A3P6GGZ20.0A0A3P6GGZ2_BRAOL; Uncharacterized protein
STRINGBra007640.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM77828124
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61910.10.0NAC domain protein 66
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  3. Yang C, et al.
    Transcription Factor MYB26 Is Key to Spatial Specificity in Anther Secondary Thickening Formation.
    Plant Physiol., 2017. 175(1): p. 333-350
    [PMID:28724622]