PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00127201001

Common Name

GSBRNA2T00127201001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

M-type_MADS

Protein Properties

Length: 178aa MW: 20521.6 Da PI: 8.6705

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00127201001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	50.1	3.6e-16	10	53	2	45
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45 ie r+ +skR++g+lKKAeE+ vLCd ++ +++fs+t k GSBRNA2T00127201001 10 TIECPKERSSKYSKRKKGLLKKAEEMAVLCDSDIILLVFSPTSK 53 67777889999*****************************9975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50066	20.955	1	61	IPR002100	Transcription factor, MADS-box
SMART	SM00432	3.3E-22	1	60	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	4.45E-21	2	81	IPR002100	Transcription factor, MADS-box
CDD	cd00266	5.31E-21	2	84	No hit	No description
PRINTS	PR00404	1.0E-13	3	23	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	5.8E-16	11	54	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.0E-13	23	38	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.0E-13	38	59	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 178 aa Download sequence Send to blast
MGRKKIDLKT IECPKERSSK YSKRKKGLLK KAEEMAVLCD SDIILLVFSP TSKPNLFYPH 60 SRPLSRILEK LSNMSEYELE ERRAYTKKTL VKLLKNKNVE IPNENHNHSS GRDEVQLQED 120 DKVIELGEAR ELLDDNTSIL RNWQDPHRVD DLAKLTIMED HLVSILSLIK KAQIEQG*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00127201001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC237304	1e-84	AC237304.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH006I08, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022563599.1	1e-112	agamous-like MADS-box protein AGL65
TrEMBL	A0A0D3DVC8	1e-123	A0A0D3DVC8_BRAOL; Uncharacterized protein
STRING	Bo8g098790.1	1e-124	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM7330	18	38

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G26320.1	2e-13	AGAMOUS-like 33

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]