PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00127297001
Common NameGSBRNA2T00127297001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family B3
Protein Properties Length: 92aa    MW: 10255.1 Da    PI: 11.4867
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00127297001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B370.13e-22589692
                         ..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS
                   B3  6 tpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92
                         + + ++++g l+lp +f+++hg++k++   +tl  ++g +W  +l+ + ++gr+ l+kGWk+F+ +ngLk+gD+++F+l+g++++ +
  GSBRNA2T00127297001  5 IEHASFRKGSLRLPLRFMKKHGLDKPR--LITLLGKDGTKWVANLRRESSGGRMRLGKGWKDFALDNGLKVGDSFTFELVGKNNTPP 89
                         556789999***************655..8***************88888888**************************99766655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM010191.1E-18190IPR003340B3 DNA binding domain
PROSITE profilePS5086315.904191IPR003340B3 DNA binding domain
CDDcd100171.91E-23288No hitNo description
SuperFamilySSF1019365.89E-24388IPR015300DNA-binding pseudobarrel domain
PfamPF023626.3E-21489IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.107.3E-22787IPR015300DNA-binding pseudobarrel domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 92 aa     Download sequence    Send to blast
MTLTIEHASF RKGSLRLPLR FMKKHGLDKP RLITLLGKDG TKWVANLRRE SSGGRMRLGK  60
GWKDFALDNG LKVGDSFTFE LVGKNNTPPM I*
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00127297001
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013603506.11e-57PREDICTED: LOW QUALITY PROTEIN: B3 domain-containing protein REM12
SwissprotQ8S8E87e-23REML1_ARATH; B3 domain-containing protein REM-like 1
TrEMBLA0A0D3DVL12e-56A0A0D3DVL1_BRAOL; Uncharacterized protein
STRINGBo8g099620.14e-57(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM78281641
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24690.13e-25B3 family protein
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]