PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00127298001
Common NameGSBRNA2T00127298001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family B3
Protein Properties Length: 115aa    MW: 12555.7 Da    PI: 8.7064
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00127298001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B354.32.5e-17998497
                         E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EE CS
                   B3  4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvv 94
                         +ltp+dv + ++l+lp +f++++g+ k +  ++tl  ++g +W   l    k+g   l+ GWk+F++ang+k+g++++++ + + ++++ v+
  GSBRNA2T00127298001  9 TLTPEDV-RACQLILPSQFMKANGIYKLG--KITLLGKNGTRWLAFL--LSKDGLLALGCGWKDFCQANGVKTGESFTLECICEaNDATHVF 95
                         4555555.5678***********988655..8***************..999999*************************998878887777 PP

                         EEE CS
                   B3 95 kvf 97
                         k +
  GSBRNA2T00127298001 96 KHC 98
                         766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.103.1E-18298IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.14E-19398IPR015300DNA-binding pseudobarrel domain
SMARTSM010198.3E-155101IPR003340B3 DNA binding domain
PROSITE profilePS5086311.8715100IPR003340B3 DNA binding domain
PfamPF023624.9E-16799IPR003340B3 DNA binding domain
CDDcd100172.59E-16985No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 115 aa     Download sequence    Send to blast
MKNQLVTLTL TPEDVRACQL ILPSQFMKAN GIYKLGKITL LGKNGTRWLA FLLSKDGLLA  60
LGCGWKDFCQ ANGVKTGESF TLECICEAND ATHVFKHCSI SGVKTKKNSW LETC*
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00127298001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013603506.11e-66PREDICTED: LOW QUALITY PROTEIN: B3 domain-containing protein REM12
SwissprotP0CAP43e-42REM12_ARATH; B3 domain-containing protein REM12
TrEMBLA0A3N6SKJ49e-64A0A3N6SKJ4_BRACR; Uncharacterized protein
STRINGBra007835.1-P5e-55(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM78281641
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24680.11e-44B3 family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]