PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00127470001
Common NameGSBRNA2T00127470001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family CAMTA
Protein Properties Length: 948aa    MW: 106651 Da    PI: 5.7366
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00127470001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-1179.83.3e-56201363118
                 CG-1   3 ke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseen 91 
                          +e ++rwl++ ei++iL+n++++++++e++t+p sgs++L++rk++ryfrkDG++w+kk+dgktv+E+he+LK g+v+vl+cyYah+++n
  GSBRNA2T00127470001  20 SEaRNRWLRPPEICEILQNYQRFQISTEPPTTPASGSVFLFDRKVLRYFRKDGHNWRKKRDGKTVKEAHERLKAGSVDVLQCYYAHGHDN 109
                          4449************************************************************************************** PP

                 CG-1  92 ptfqrrcywlLeeelekivlvhylevk 118
                          ++fqrr+yw+L+eel++iv+vhylevk
  GSBRNA2T00127470001 110 ENFQRRSYWMLQEELSHIVFVHYLEVK 136
                          ************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143781.74115141IPR005559CG-1 DNA-binding domain
SMARTSM010761.8E-8218136IPR005559CG-1 DNA-binding domain
PfamPF038593.2E-4921135IPR005559CG-1 DNA-binding domain
Gene3DG3DSA:2.60.40.106.8E-5388476IPR013783Immunoglobulin-like fold
SuperFamilySSF812965.4E-15389475IPR014756Immunoglobulin E-set
PfamPF018331.8E-4389475IPR002909IPT domain
Gene3DG3DSA:1.25.40.206.7E-14546678IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029715.22553674IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484032.95E-14561677IPR020683Ankyrin repeat-containing domain
CDDcd002042.30E-9562674No hitNo description
PROSITE profilePS500889.297615647IPR002110Ankyrin repeat
SuperFamilySSF525402.28E-8764818IPR027417P-loop containing nucleoside triphosphate hydrolase
SMARTSM000150.049767789IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500968.974769795IPR000048IQ motif, EF-hand binding site
PfamPF006120.0016770788IPR000048IQ motif, EF-hand binding site
SMARTSM000150.0054790812IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500969.432791815IPR000048IQ motif, EF-hand binding site
PfamPF006127.0E-4793812IPR000048IQ motif, EF-hand binding site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 948 aa     Download sequence    Send to blast
MAEARRFSPN NELDVCQILS EARNRWLRPP EICEILQNYQ RFQISTEPPT TPASGSVFLF  60
DRKVLRYFRK DGHNWRKKRD GKTVKEAHER LKAGSVDVLQ CYYAHGHDNE NFQRRSYWML  120
QEELSHIVFV HYLEVKGSRV STSYNRMQRT AEDSALSSHE VFTSERDGYA SGSINQYDHN  180
NHSQATDSAS VSGAHTPELE DAESAYNQQG SSIVYSHQQP PSTGFDPLYQ MSLTRNSSYY  240
HLIITNVTWY LQFFFLSSKN YQWSWSKKQK SIDSQTWEEI LGNCGPGAEG LLPLQPNSEH  300
EVLDQILQGS SITMQAPYLS TTKQHLLDGA LGEEGLKKVD SFSRWMSKEL GDVCVIADAN  360
ESFTHSSSTA YLDGYVMSPS LSKEQLFSII DFAPNWTYVG CEVNVLVTGK FLKTREEEAE  420
TREWSCMFGQ TEVPADVIAD GILQCVAPTS EAGRVPFYVT CSNRLACSEV REFEYKVLES  480
QAFGRETDES TESLEARFVK LLCSKSDSPS SNARGDLSQV SEKISLLLFE NDDQLDQMLM  540
NEISQESMQE KLLQEALKER LHSWLLQKIA EGGRGPNVLY EGGQGILHFA AALGYNWALE  600
PTVVAGVSVD FRDVNGWTAL HWAAFFGREL VVGSLIALGA SPGTLTDPNP DFPSGSTPSD  660
LAYANGYKGI AGYLSEYALR AHVSLLSLNE SNAETSESAP SPSSSSLTDS LTAVCNATQA  720
AARIHQVFRA QSFQKKQMKK FGVSEERALS MLAPKTHKQG RAHSDDSVQA AAIRIQNNFR  780
GYKGRKDYLI TRQRIIRIQA HVRGYQVRKN YRKIIWSVGI LEKVILRWRS KGAGLRGFKS  840
DALVDKMQDG TEREEDDDFF KQGRKQTEER LQKALARVKS MAQYPEARDQ YRRLVNVVND  900
IQESKVEKAL ESSEEATCFD NDLIDIEALL GDDDTLMLPM SSTLWNT*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.68840.0flower| leaf| seed
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, stems, leaves, carpels, and siliques, but not in stigmas or other parts of the flower. {ECO:0000269|PubMed:11162426, ECO:0000269|PubMed:12218065, ECO:0000269|PubMed:14581622}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3'. Binds calmodulin in a calcium-dependent manner in vitro (PubMed:12218065). Regulates transcriptional activity in response to calcium signals (Probable). Involved in freezing tolerance in association with CAMTA1 and CAMTA2 (PubMed:23581962). Required for the cold-induced expression of DREB1B/CBF1, DREB1C/CBF2, ZAT12 and GOLS3 (PubMed:19270186). Involved in response to cold. Contributes together with CAMTA5 to the positive regulation of the cold-induced expression of DREB1A/CBF3, DREB1B/CBF1 and DREB1C/CBF2 (PubMed:28351986). Involved together with CAMTA2 and CAMTA4 in the positive regulation of a general stress response (GSR) (PubMed:25039701). Involved in the regulation of GSR amplitude downstream of MEKK1 (PubMed:25157030). Involved in the regulation of a set of genes involved in defense responses against pathogens (PubMed:18298954). Involved in the regulation of both basal resistance and systemic acquired resistance (SAR) (PubMed:21900483). Acts as negative regulator of plant immunity (PubMed:19122675, PubMed:21900483, PubMed:22345509, PubMed:28407487). Binds to the promoter of the defense-related gene EDS1 and represses its expression (PubMed:19122675). Binds to the promoter of the defense-related gene NDR1 and represses its expression (PubMed:22345509). Involved in defense against insects (PubMed:23072934, PubMed:22371088). Required for tolerance to the generalist herbivore Trichoplusia ni, and contributes to the positive regulation of genes associated with glucosinolate metabolism (PubMed:23072934). Required for tolerance to Bradysia impatiens larvae. Mediates herbivore-induced wound response (PubMed:22371088). Required for wound-induced jasmonate accumulation (PubMed:23072934, PubMed:22371088). Involved in the regulation of ethylene-induced senescence by binding to the promoter of the senescence-inducer gene EIN3 and repressing its expression (PubMed:22345509). {ECO:0000269|PubMed:12218065, ECO:0000269|PubMed:18298954, ECO:0000269|PubMed:19122675, ECO:0000269|PubMed:19270186, ECO:0000269|PubMed:21900483, ECO:0000269|PubMed:22345509, ECO:0000269|PubMed:22371088, ECO:0000269|PubMed:23072934, ECO:0000269|PubMed:23581962, ECO:0000269|PubMed:25039701, ECO:0000269|PubMed:25157030, ECO:0000269|PubMed:28351986, ECO:0000269|PubMed:28407487, ECO:0000305|PubMed:11925432}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00127470001
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By heat shock, UVB, salt, wounding, ethylene and methyl jasmonate (PubMed:11162426, PubMed:12218065). Induced by infection with the fungal pathogen Golovinomyces cichoracearum (powdery mildew) and the bacterial pathogen Pseudomonas syringae pv tomato strain DC3000 (PubMed:22345509). {ECO:0000269|PubMed:11162426, ECO:0000269|PubMed:12218065, ECO:0000269|PubMed:22345509}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013664176.10.0calmodulin-binding transcription activator 3-like isoform X1
RefseqXP_013664177.10.0calmodulin-binding transcription activator 3-like isoform X2
SwissprotQ8GSA70.0CMTA3_ARATH; Calmodulin-binding transcription activator 3
TrEMBLA0A3P5YUK70.0A0A3P5YUK7_BRACM; Uncharacterized protein
STRINGBra038534.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM86012535
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22300.20.0signal responsive 1
Publications ? help Back to Top
  1. Zhang L,Du L,Shen C,Yang Y,Poovaiah BW
    Regulation of plant immunity through ubiquitin-mediated modulation of Ca(2+) -calmodulin-AtSR1/CAMTA3 signaling.
    Plant J., 2014. 78(2): p. 269-81
    [PMID:24528504]
  2. Benn G, et al.
    A key general stress response motif is regulated non-uniformly by CAMTA transcription factors.
    Plant J., 2014. 80(1): p. 82-92
    [PMID:25039701]
  3. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  4. Rahman H,Yang J,Xu YP,Munyampundu JP,Cai XZ
    Phylogeny of Plant CAMTAs and Role of AtCAMTAs in Nonhost Resistance to Xanthomonas oryzae pv. oryzae.
    Front Plant Sci, 2016. 7: p. 177
    [PMID:26973658]
  5. Benn G, et al.
    Plastidial metabolite MEcPP induces a transcriptionally centered stress-response hub via the transcription factor CAMTA3.
    Proc. Natl. Acad. Sci. U.S.A., 2016. 113(31): p. 8855-60
    [PMID:27432993]
  6. Kidokoro S, et al.
    Different Cold-Signaling Pathways Function in the Responses to Rapid and Gradual Decreases in Temperature.
    Plant Cell, 2017. 29(4): p. 760-774
    [PMID:28351986]
  7. Lolle S, et al.
    Matching NLR Immune Receptors to Autoimmunity in camta3 Mutants Using Antimorphic NLR Alleles.
    Cell Host Microbe, 2017. 21(4): p. 518-529.e4
    [PMID:28407487]
  8. Kim YS, et al.
    CAMTA-Mediated Regulation of Salicylic Acid Immunity Pathway Genes in Arabidopsis Exposed to Low Temperature and Pathogen Infection.
    Plant Cell, 2017. 29(10): p. 2465-2477
    [PMID:28982964]
  9. Jacob F, et al.
    A dominant-interfering camta3 mutation compromises primary transcriptional outputs mediated by both cell surface and intracellular immune receptors in Arabidopsis thaliana.
    New Phytol., 2018. 217(4): p. 1667-1680
    [PMID:29226970]