PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00127521001
Common NameGSBRNA2T00127521001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family ERF
Protein Properties Length: 161aa    MW: 17717.9 Da    PI: 9.744
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00127521001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP249.11.4e-1595143153
                  AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkl 53 
                          +++kGVr ++ +g+W AeI+dp     r   + +lg f tae+Aa+a+++a+ ++
  GSBRNA2T00127521001  95 KKHKGVRKKP-SGKWSAEIWDP-----RlkVKRWLGVFPTAEMAARAYDEAAAEI 143
                          589****999.7*********9.....445777******************9886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000188.57E-1495151No hitNo description
PROSITE profilePS5103219.05896153IPR001471AP2/ERF domain
SMARTSM003801.5E-2096159IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.2E-2096151IPR001471AP2/ERF domain
SuperFamilySSF541711.05E-1496151IPR016177DNA-binding domain
PfamPF008472.6E-896143IPR001471AP2/ERF domain
PRINTSPR003679.0E-697108IPR001471AP2/ERF domain
PRINTSPR003679.0E-6119135IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 161 aa     Download sequence    Send to blast
MDYSYNVPSD DQNPVALRPP SSSSSYLTRD QEHQIMVSAL QQVISNVGSD TSSPNGITSG  60
ADLPLPDAGP CPLCGITGCY GCAFQRRDEE TKNEKKHKGV RKKPSGKWSA EIWDPRLKVK  120
RWLGVFPTAE MAARAYDEAA AEISARRGRM NGHGIRRRRR *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1148159RMNGHGIRRRRR
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00127521001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013747053.12e-99putative ethylene-responsive transcription factor ERF121
SwissprotQ38Q402e-68EF122_ARATH; Ethylene-responsive transcription factor ERF122
TrEMBLM4EZK71e-88M4EZK7_BRARP; Uncharacterized protein
STRINGBra034250.1-P2e-89(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM34721562
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67000.14e-54ERF family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]