PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00127522001
Common NameGSBRNA2T00127522001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family ERF
Protein Properties Length: 163aa    MW: 17956.3 Da    PI: 10.4563
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00127522001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP246.77.9e-1597145153
                  AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkl 53 
                          +++kGVr ++ +g+W AeI+ p     r   + +lg f tae+Aa+a+++a+ ++
  GSBRNA2T00127522001  97 KKHKGVRKKP-SGKWSAEIWNP-----RlkVKRWLGVFPTAEMAARAYDEAAAEI 145
                          589****999.7*********9.....445777******************9886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541712.03E-1498153IPR016177DNA-binding domain
PfamPF008476.2E-998145IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.8E-1998153IPR001471AP2/ERF domain
SMARTSM003804.1E-1898161IPR001471AP2/ERF domain
PROSITE profilePS5103218.87498155IPR001471AP2/ERF domain
PRINTSPR003679.1E-699110IPR001471AP2/ERF domain
PRINTSPR003679.1E-6121137IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 163 aa     Download sequence    Send to blast
MDYSSNVPSD DQNPVALRPP SSSSSSSYLT RDQEHQIMVS ALRQVISNVG SDTSSPNGIT  60
SGADLPLPDA GPCPLCGITG CYGCAFQRRD EETKKEKKHK GVRKKPSGKW SAEIWNPRLK  120
VKRWLGVFPT AEMAARAYDE AAAEISARRR RMNGHGIRRR RR*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1147161RRRRMNGHGIRRRRR
2150161RMNGHGIRRRRR
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00127522001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013747053.14e-95putative ethylene-responsive transcription factor ERF121
SwissprotQ38Q402e-66EF122_ARATH; Ethylene-responsive transcription factor ERF122
TrEMBLA0A3P6CCW51e-89A0A3P6CCW5_BRAOL; Uncharacterized protein
STRINGBra034250.1-P3e-85(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM34721562
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67010.13e-41ERF family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]