PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00127576001
Common NameGSBRNA2T00127576001, LOC106399777
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family ERF
Protein Properties Length: 210aa    MW: 22991.8 Da    PI: 4.758
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00127576001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP249.69.6e-162573355
                  AP2  3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                         y+G r ++ +g+Wv+eIr+p++   + r++lg+f tae+Aa+a++ a+++++g
  GSBRNA2T00127576001 25 YRGARMRS-WGKWVSEIREPRK---KSRIWLGSFPTAEMAARAHDVAALSIKG 73
                         89999888.**********843...6***********************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541714.38E-202482IPR016177DNA-binding domain
PROSITE profilePS5103222.8132481IPR001471AP2/ERF domain
SMARTSM003803.8E-362487IPR001471AP2/ERF domain
PfamPF008471.1E-92473IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.2E-302482IPR001471AP2/ERF domain
PRINTSPR003671.1E-92536IPR001471AP2/ERF domain
CDDcd000181.96E-312583No hitNo description
PRINTSPR003671.1E-94763IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 210 aa     Download sequence    Send to blast
MVASHGEDTE SSSTKKKKET SAVVYRGARM RSWGKWVSEI REPRKKSRIW LGSFPTAEMA  60
ARAHDVAALS IKGSSAILNF PELTNSLPRP VSLSPADIQA AATKAAFMEF KTPTLHLEDE  120
TPSQTRCATE TSDKASSSPT TSTLSEELGE IVELPTLDNE LSKDFKLFDS LEGLVGMPPW  180
LDATDKDFSY GEDPVLFDPL SQESLLWNH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-1825851576Ethylene-responsive transcription factor ERF096
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, stems, seeds and stamen. {ECO:0000269|PubMed:16307362}.
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00127576001
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By drought. {ECO:0000269|PubMed:16307362}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013695684.11e-151ethylene-responsive transcription factor ERF042
SwissprotQ52QU12e-90ERF42_ARATH; Ethylene-responsive transcription factor ERF042
TrEMBLA0A397ZUK81e-131A0A397ZUK8_BRACM; Uncharacterized protein
STRINGBo4g158810.11e-130(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM18528283
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G25820.11e-84ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]