PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00127927001
Common NameGSBRNA2T00127927001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family B3
Protein Properties Length: 213aa    MW: 24262.5 Da    PI: 6.5318
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00127927001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B345.21.7e-1431121199
                          EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
                   B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                          f+k+ +ps   k++++ +p +f+ + g  ++ + t+t++++ g + ++++  +++++++++ +GW+eF++a+ + eg f+ F ++g+s+f
  GSBRNA2T00127927001  31 FIKIILPSTI-KEKMMKIPARFV-RLG--PKLTDTVTIQTPVGFKRSIRI--KRTGNEVWFDNGWSEFAEAHSISEGHFLYFCYEGNSSF 114
                          6666655555.5556********.565..44777****************..*************************************9 PP

                          ..EEEEE-S CS
                   B3  91 elvvkvfrk 99 
                            +v++f+ 
  GSBRNA2T00127927001 115 --RVMIFDV 121
                          ..9999985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019363.34E-2025122IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.5E-1927122IPR015300DNA-binding pseudobarrel domain
CDDcd100171.47E-1529120No hitNo description
PROSITE profilePS5086311.63230122IPR003340B3 DNA binding domain
SMARTSM010195.2E-1531122IPR003340B3 DNA binding domain
PfamPF023621.8E-1232120IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 213 aa     Download sequence    Send to blast
MNTTRRASSR ITSAASQRRQ KPEPEPAVKK FIKIILPSTI KEKMMKIPAR FVRLGPKLTD  60
TVTIQTPVGF KRSIRIKRTG NEVWFDNGWS EFAEAHSISE GHFLYFCYEG NSSFRVMIFD  120
VSASEIDYPM DKVHVIESDD DEVMEVMDTD DEEGFTRVDS SDNDSSDEEA IDLEKLLKKK  180
PRVNVKSETI NIGNVSRHKL KSSGFFFFFS CV*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.161150.0microspore-derived embryo| seed
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00127927001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013602987.11e-139PREDICTED: B3 domain-containing protein At1g49475 isoform X1
RefseqXP_013720044.11e-139B3 domain-containing protein At1g49475-like isoform X1
SwissprotQ9XIB42e-84Y1475_ARATH; B3 domain-containing protein At1g49475
TrEMBLA0A3P6FM041e-151A0A3P6FM04_BRAOL; Uncharacterized protein
STRINGBo8g011590.11e-139(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15912578
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49475.15e-67B3 family protein
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]