PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00128670001
Common NameGSBRNA2T00128670001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family bHLH
Protein Properties Length: 121aa    MW: 13827.7 Da    PI: 10.2386
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00128670001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH31.72.8e-102268354
                         HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                  HLH  3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                         ++h e+Er R +++N++f  Lr ++P+      + ++Ka+ Le +v+YI++L
  GSBRNA2T00128670001 22 MNHVEAERLRPKKLNQRFYALRAVVPNI-----TGMDKASLLEDTVRYINEL 68
                         689************************6.....47***************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.0591968IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.15E-152189IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.47E-92269No hitNo description
Gene3DG3DSA:4.10.280.105.8E-132389IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000108.4E-82368IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.7E-92574IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 121 aa     Download sequence    Send to blast
MLKRKRQKKH KKKPTHGREE PMNHVEAERL RPKKLNQRFY ALRAVVPNIT GMDKASLLED  60
TVRYINELKL NAENAESKKN AVQIQLNKLN EEIAEQNAVL EFVDAGKSSG DEDRREGYGS  120
*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A2e-261794279Transcription factor MYC2
5gnj_B2e-261794279Transcription factor MYC2
5gnj_E2e-261794279Transcription factor MYC2
5gnj_F2e-261794279Transcription factor MYC2
5gnj_G2e-261794279Transcription factor MYC2
5gnj_I2e-261794279Transcription factor MYC2
5gnj_M2e-261794279Transcription factor MYC2
5gnj_N2e-261794279Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
118LKRKRQKK
2212KRKRQKKHKKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00128670001
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By UV treatment. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1892451e-156AC189245.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB017K02, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022562144.14e-83transcription factor bHLH28-like
SwissprotQ9LUK71e-31BH028_ARATH; Transcription factor bHLH28
TrEMBLA0A0D3D9L93e-70A0A0D3D9L9_BRAOL; Uncharacterized protein
TrEMBLA0A3P6ESS43e-70A0A3P6ESS4_BRAOL; Uncharacterized protein
STRINGBo7g075790.15e-71(Brassica oleracea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G46830.11e-33NACL-inducible gene 1
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  3. Chen X,Huang H,Qi T,Liu B,Song S
    New perspective of the bHLH-MYB complex in jasmonate-regulated plant fertility in arabidopsis.
    Plant Signal Behav, 2016. 11(2): p. e1135280
    [PMID:26829586]
  4. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]
  5. Song S, et al.
    MYC5 is Involved in Jasmonate-Regulated Plant Growth, Leaf Senescence and Defense Responses.
    Plant Cell Physiol., 2017. 58(10): p. 1752-1763
    [PMID:29017003]
  6. Min JH, et al.
    Arabidopsis Basic Helix-Loop-Helix 34 (bHLH34) Is Involved in Glucose Signaling through Binding to a GAGA Cis-Element.
    Front Plant Sci, 2017. 8: p. 2100
    [PMID:29321786]