PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00129223001

Common Name

GSBRNA2T00129223001, LOC106454848

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

ZF-HD

Protein Properties

Length: 220aa MW: 25077 Da PI: 10.1981

Description

ZF-HD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00129223001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	ZF-HD_dimer	97.3	1.2e-30	59	115	2	59
ZF-HD_dimer 2 ekvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrevee 59 ++++YkeC+kNhA+s+Ggh+vDGC+Efmp geegt alkCaAC CHR+FHR+ev e GSBRNA2T00129223001 59 QETKYKECQKNHAVSTGGHVVDGCCEFMPG-GEEGTLGALKCAACSCHRSFHRKEVYE 115 5789***********************9.999******************9865 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04770	3.2E-28	61	113	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDom	PD125774	7.0E-23	62	113	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMs	TIGR01566	7.8E-27	62	113	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profile	PS51523	25.433	63	112	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamily	SSF46689	7.39E-18	138	210	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	1.0E-25	147	210	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01565	1.2E-25	149	206	IPR006455	Homeodomain, ZF-HD class

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 220 aa Download sequence Send to blast
MEHGGKCNAI ATTTKISTKI LEAKPHTNSY PKAKPGLDPT LPPFLVKKEN HKPSSRGDQE 60 TKYKECQKNH AVSTGGHVVD GCCEFMPGGE EGTLGALKCA ACSCHRSFHR KEVYEHINST 120 QELMSPAFYR SGSLYKAMIQ PRGLYLPKKK RIRTKINEEQ KEKMKEFAER LGWRILKKDE 180 EEINKFCRLV NLRRQVFKVW MHNNKQAMKR NGNACNLQK*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wh7_A	8e-18	150	207	18	75	ZF-HD homeobox family protein
Search in ModeBase

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Mostly expressed in flowers and inflorescence. {ECO:0000269\|PubMed:16428600}.

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00129223001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009115766.1	1e-165	PREDICTED: zinc-finger homeodomain protein 7
Refseq	XP_013752392.1	1e-165	zinc-finger homeodomain protein 7
Swissprot	Q9SVL0	1e-100	ZHD7_ARATH; Zinc-finger homeodomain protein 7
TrEMBL	A0A397XZJ4	1e-163	A0A397XZJ4_BRACM; Uncharacterized protein
TrEMBL	M4F6Z2	1e-163	M4F6Z2_BRARP; Uncharacterized protein
STRING	Bra036852.1-P	1e-164	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM13854	15	25

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G50890.1	4e-95	homeobox protein 28

Link Out ? help Back to Top
Entrez Gene	106454848

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]