PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00129368001

Common Name

GSBRNA2T00129368001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

MYB_related

Protein Properties

Length: 1611aa MW: 176663 Da PI: 7.2232

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00129368001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	33.4	1.1e-10	855	896	3	46
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +WT+eE e ++ +++G++ +k+Ia+ + +t +c+++++k GSBRNA2T00129368001 855 PWTPEEKETFLSMLAMHGKD-FKKIASFLT-QKTTADCIDYYYK 896 8***************99.****9.9********98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	1.2E-14	838	899	IPR009057	Homeodomain-like
PROSITE profile	PS51293	15.246	851	902	IPR017884	SANT domain
SMART	SM00717	1.6E-9	852	900	IPR001005	SANT/Myb domain
Pfam	PF00249	3.2E-9	854	896	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	1.1E-7	855	901	IPR009057	Homeodomain-like
CDD	cd00167	4.74E-8	855	897	No hit	No description
PROSITE profile	PS51293	10.131	1065	1116	IPR017884	SANT domain
SMART	SM00717	2.5E-5	1066	1114	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	1.09E-7	1069	1116	IPR009057	Homeodomain-like
CDD	cd00167	6.43E-5	1070	1111	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1611 aa Download sequence Send to blast
MPPQDHSSWD RKDLLRQRKH ERPSEPPFDP PPFRWRDSPS SSSSSHREFS RWGGSADFRR 60 PSSHGKQGGR YQFVEESSHG YTSSRSSARM FENDYYRPSA PRGDWRYTRN CRDDRVPLSQ 120 KDWRSNTWEM NNGSYRAFDR PCGVRNGRRS VEERPPPASD THTTVVNSWE QANSAQQMDI 180 ELCTPSRTVR SKNEQKFLDQ RQSLPSDPHS EGLGLLDRPS SVNSYENKEC SPAKQSNGLM 240 HGRRLAGDNA SDPPILNAGI EGTRNQILLK DMHDTKLHEV SDLDGVRENG KENSLGAIGK 300 LPVWTRSGSF ASQSSGFSHS SSLKSLGAVD SSDGKHKILP KTVAVTQSSS GDVTACPKTT 360 VSEEMSSRKK QRLGWGEGLA KYENKKVDVN TTEDGTDLLE NSAEEIHSLN KNTADKSPTA 420 ANAPDYGSPT TPSSVACNSS PDKSSAKAAI GASDVSNVCR SPSPVSSIHL ERLPINIEEL 480 DNISMERVGC LLSELLGTDD PGTGDSSSVQ LTSMKKLLAW KGDILKAVEM AESEIDLLES 540 KHKALKLESA RQCRVVGPSS DLSEGDENVQ QEASCVLGLK AVASSVAETL VRDPVHQAVS 600 AKDPVEIFED SCREVSALPQ FLATVGSNED ILPIPSTKAD SNQETIDLSS ADDSMVSDED 660 LLCAKLLSTN KIYASESSQV FNKLLPRDFS SFDDSRFPGR CQRQFDSHVK EKIADRIELL 720 RAREKILLLQ FKAFQLAWKK DLRQLTSAKY QPKANKKTEV FPYAKNGGHL KLSQPVRLRL 780 SSSAQRRDSV ASTTELVSYM KKLLKNTRLK PLRDILRMPA MILDEKERVR SRFISSNGLI 840 EDPCDVEKER TMINPWTPEE KETFLSMLAM HGKDFKKIAS FLTQKTTADC IDYYYKNHKS 900 DCFAKIKKQR SFGKEGKHTY MLAPTKKWKR EMGAASLDIL GAVSIIAANA GKVASTRQTS 960 SKRITLRGCS SSSSLQHDGN YSEGYSHSFD FPRKRTLGAD VVAVGPLSSE QINSCLRTSV 1020 KSREGCNDHL KFAPAAKKPR ISHATHNENS NEDDDSCSEE SCGETGPIHW TDVERSAFIQ 1080 GFSLFGKNFA SLSRFVRTRS PDQCRVFFSK VRKCLGLECI QSGSGNVSAS ASVDNANEGG 1140 GSDLEGPCAT ESNSGICNNG VSAKIGLNTL TSPLNMNQEG ANHSGFEHVE AGLSRSEQEN 1200 GLALLRLKDG TNSEPCRDLV DINTVESHCQ AADQMNSNDL PSKDIDEGNL TPIAVSSDPL 1260 YCGSIVLSTN IVEKGSGCEG AVVPKQSSKM QDGVMQAANR TRNSGLEAEA APSSFRYPEC 1320 LHHVPIEEDL VGVSVPQGDS NCHIESELPS PLVVQTNNMG WQFSEVNLDF DRRSQVLGHV 1380 KPEQNGQLHA TSTESCQIPW ISFTQDPSRI IRSKSDLIVK AQRTGEAFSL KKCTSSATKP 1440 LTVFQKDGRS GHSRSHSFSL SDTKRLDKNG DVKLFGTVLT ADENGSKQKH NPGGSIRPSS 1500 TLSRDHETGH QYINQQHLQN VPITSYGFWD GNRIQTGLTS LPESAKLVAS YPEALTTHQK 1560 QQVVSTKEIQ LDVSGILSFG KQIEDRAEVS SGKDKGKIGG EVNGVAEAAT *

Sequence ? help Back to Top

Protein Sequence Length: 1611 aa Download sequence Send to blast

MPPQDHSSWD RKDLLRQRKH ERPSEPPFDP PPFRWRDSPS SSSSSHREFS RWGGSADFRR  60
PSSHGKQGGR YQFVEESSHG YTSSRSSARM FENDYYRPSA PRGDWRYTRN CRDDRVPLSQ  120
KDWRSNTWEM NNGSYRAFDR PCGVRNGRRS VEERPPPASD THTTVVNSWE QANSAQQMDI  180
ELCTPSRTVR SKNEQKFLDQ RQSLPSDPHS EGLGLLDRPS SVNSYENKEC SPAKQSNGLM  240
HGRRLAGDNA SDPPILNAGI EGTRNQILLK DMHDTKLHEV SDLDGVRENG KENSLGAIGK  300
LPVWTRSGSF ASQSSGFSHS SSLKSLGAVD SSDGKHKILP KTVAVTQSSS GDVTACPKTT  360
VSEEMSSRKK QRLGWGEGLA KYENKKVDVN TTEDGTDLLE NSAEEIHSLN KNTADKSPTA  420
ANAPDYGSPT TPSSVACNSS PDKSSAKAAI GASDVSNVCR SPSPVSSIHL ERLPINIEEL  480
DNISMERVGC LLSELLGTDD PGTGDSSSVQ LTSMKKLLAW KGDILKAVEM AESEIDLLES  540
KHKALKLESA RQCRVVGPSS DLSEGDENVQ QEASCVLGLK AVASSVAETL VRDPVHQAVS  600
AKDPVEIFED SCREVSALPQ FLATVGSNED ILPIPSTKAD SNQETIDLSS ADDSMVSDED  660
LLCAKLLSTN KIYASESSQV FNKLLPRDFS SFDDSRFPGR CQRQFDSHVK EKIADRIELL  720
RAREKILLLQ FKAFQLAWKK DLRQLTSAKY QPKANKKTEV FPYAKNGGHL KLSQPVRLRL  780
SSSAQRRDSV ASTTELVSYM KKLLKNTRLK PLRDILRMPA MILDEKERVR SRFISSNGLI  840
EDPCDVEKER TMINPWTPEE KETFLSMLAM HGKDFKKIAS FLTQKTTADC IDYYYKNHKS  900
DCFAKIKKQR SFGKEGKHTY MLAPTKKWKR EMGAASLDIL GAVSIIAANA GKVASTRQTS  960
SKRITLRGCS SSSSLQHDGN YSEGYSHSFD FPRKRTLGAD VVAVGPLSSE QINSCLRTSV  1020
KSREGCNDHL KFAPAAKKPR ISHATHNENS NEDDDSCSEE SCGETGPIHW TDVERSAFIQ  1080
GFSLFGKNFA SLSRFVRTRS PDQCRVFFSK VRKCLGLECI QSGSGNVSAS ASVDNANEGG  1140
GSDLEGPCAT ESNSGICNNG VSAKIGLNTL TSPLNMNQEG ANHSGFEHVE AGLSRSEQEN  1200
GLALLRLKDG TNSEPCRDLV DINTVESHCQ AADQMNSNDL PSKDIDEGNL TPIAVSSDPL  1260
YCGSIVLSTN IVEKGSGCEG AVVPKQSSKM QDGVMQAANR TRNSGLEAEA APSSFRYPEC  1320
LHHVPIEEDL VGVSVPQGDS NCHIESELPS PLVVQTNNMG WQFSEVNLDF DRRSQVLGHV  1380
KPEQNGQLHA TSTESCQIPW ISFTQDPSRI IRSKSDLIVK AQRTGEAFSL KKCTSSATKP  1440
LTVFQKDGRS GHSRSHSFSL SDTKRLDKNG DVKLFGTVLT ADENGSKQKH NPGGSIRPSS  1500
TLSRDHETGH QYINQQHLQN VPITSYGFWD GNRIQTGLTS LPESAKLVAS YPEALTTHQK  1560
QQVVSTKEIQ LDVSGILSFG KQIEDRAEVS SGKDKGKIGG EVNGVAEAAT *

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4a69_C	9e-18	812	903	3	93	NUCLEAR RECEPTOR COREPRESSOR 2
4a69_D	9e-18	812	903	3	93	NUCLEAR RECEPTOR COREPRESSOR 2
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Bna.16532	0.0	seed

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00129368001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009115935.1	0.0	PREDICTED: uncharacterized protein LOC103841164
TrEMBL	M4CRS3	0.0	M4CRS3_BRARP; Uncharacterized protein
STRING	Bra006915.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5260	27	44

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G52250.1	0.0	MYB family protein

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]