PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00129478001
Common NameGSBRNA2T00129478001, LOC106382576, LOC106434817
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family S1Fa-like
Protein Properties Length: 77aa    MW: 8324.03 Da    PI: 10.7312
Description S1Fa-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00129478001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1S1FA1337.7e-42976370
                 S1FA  3 vakveakGlnPGlivllvvgglllvflvgnyilyvyaqknlPPrkkkPvskkklkreklkqGvavPGe 70
                         +a++eakG+nPGlivllv+g +l+ flv+ny++yvyaqknlPPrkkkPvskkklkreklkqGv+vPGe
  GSBRNA2T00129478001  9 KAAAEAKGMNPGLIVLLVIGVPLVGFLVANYVMYVYAQKNLPPRKKKPVSKKKLKREKLKQGVSVPGE 76
                         7899***************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046898.4E-371276IPR006779DNA binding protein S1FA
ProDomPD0190130.0081376No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 77 aa     Download sequence    Send to blast
MDGEDFARKA AAEAKGMNPG LIVLLVIGVP LVGFLVANYV MYVYAQKNLP PRKKKPVSKK  60
KLKREKLKQG VSVPGE*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.119861e-129seed
Functional Description ? help Back to Top
Source Description
UniProtDNA-binding protein that specifically recognizes a negative element (S1F) within the RPS1 promoter. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00129478001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1892691e-109AC189269.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB023B16, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013678061.15e-47DNA-binding protein S1FA1
RefseqXP_013731125.15e-47DNA-binding protein S1FA1-like
SwissprotQ423378e-19S1FA2_ARATH; DNA-binding protein S1FA2
TrEMBLA0A397Y0511e-45A0A397Y051_BRACM; Uncharacterized protein
STRINGBra006994.1-P1e-45(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM28232769
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37120.13e-08S1FA-like DNA-binding protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]