PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00129601001
Common NameGSBRNA2T00129601001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family GATA
Protein Properties Length: 325aa    MW: 35834.6 Da    PI: 6.7063
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00129601001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA56.43.9e-18233266134
                 GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                          C +C +tkTp+WR gp g+ktLCnaCG++y++ +
  GSBRNA2T00129601001 233 CMHCEVTKTPQWRLGPMGPKTLCNACGVRYKSGR 266
                          99*****************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0169925.0E-911323IPR016679Transcription factor, GATA, plant
PROSITE profilePS5011411.728227263IPR000679Zinc finger, GATA-type
SMARTSM004017.2E-16227277IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.102.4E-14231264IPR013088Zinc finger, NHR/GATA-type
SuperFamilySSF577165.23E-15231290No hitNo description
CDDcd002022.19E-14232279No hitNo description
PROSITE patternPS003440233258IPR000679Zinc finger, GATA-type
PfamPF003204.2E-16233266IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 325 aa     Download sequence    Send to blast
MFGQSFPEDI DCGNFFDNMD DILDFPGCDM DVGFNIGDSD SFPNIWTNHQ DTWPAASDPL  60
FSSNTNSDSS PELYVPFEDI VKVERPASFV SESLVAKKED SFSTNTDSSS SHSQFRSSSP  120
VSVLESSSSS SQTTNATSLV LSGKHGRPRT KRPRPPVQEM DRVNVCGADS RLIVRIPKQF  180
LSDHSKMITK KKKKKAKVTS SYSSSGIDLE TNGSNNNNNV DSYDSEQHPV RKCMHCEVTK  240
TPQWRLGPMG PKTLCNACGV RYKSGRLFPE YRPANSPTFT PALHSNSHKK VAEMRSKRCS  300
GGSYTNEESD LQDLIPNNAY IGVD*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1150154KRPRP
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00129601001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3534610.0AK353461.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-37-G07.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009116158.10.0PREDICTED: GATA transcription factor 8
SwissprotQ9SV301e-166GATA8_ARATH; GATA transcription factor 8
TrEMBLA0A397YB450.0A0A397YB45_BRACM; GATA transcription factor
TrEMBLM4CSA70.0M4CSA7_BRARP; GATA transcription factor
STRINGBra007099.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM49752751
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54810.21e-148GATA family protein
Publications ? help Back to Top
  1. Choi D, et al.
    iNID: an analytical framework for identifying network models for interplays among developmental signaling in Arabidopsis.
    Mol Plant, 2014. 7(5): p. 792-813
    [PMID:24380880]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  3. Li T,Wu XY,Li H,Song JH,Liu JY
    A Dual-Function Transcription Factor, AtYY1, Is a Novel Negative Regulator of the Arabidopsis ABA Response Network.
    Mol Plant, 2016. 9(5): p. 650-661
    [PMID:26961720]