PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00129721001
Common NameGSBRNA2T00129721001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family NAC
Protein Properties Length: 364aa    MW: 40318.2 Da    PI: 4.3109
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00129721001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM111.41e-3461061101
                  NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgk 88 
                          l+pGfrFhPtd elv +yLk+kv gkkl + ++i e+diyk+eP+dLp k  +k+++ +w+fF++r+kkyatg r+nrat+ gyWk+tgk
  GSBRNA2T00129721001   6 LAPGFRFHPTDVELVRYYLKRKVLGKKLLV-DAIVEIDIYKFEPSDLPdKsYIKSGDLKWHFFCPREKKYATGVRANRATEGGYWKTTGK 94 
                          579************************999.89**************96347778888******************************** PP

                  NAM  89 dkevlskkgelvg 101
                          +++vl  ++++  
  GSBRNA2T00129721001  95 ERAVLL-EDKVLT 106
                          ****99.444444 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.22E-383123IPR003441NAC domain
PROSITE profilePS5100532.296167IPR003441NAC domain
PfamPF023651.8E-168103IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 364 aa     Download sequence    Send to blast
MGKTQLAPGF RFHPTDVELV RYYLKRKVLG KKLLVDAIVE IDIYKFEPSD LPDKSYIKSG  60
DLKWHFFCPR EKKYATGVRA NRATEGGYWK TTGKERAVLL EDKVLTQKNI PQDTYVLCVL  120
FKKDGPGPRN GAQYGAPFNE EDWSDQEQHT DVPSPSNLAI LLRPNAETSL VVAPSLAPNK  180
DCFGGMVSES CVSDFVPSTA TTTCKLPHLN DAAHTPLSAA PLLDTNSTAS LVPTLLAPTN  240
DNDDIYSMLD LFVDDDEYLR FCEPNNNEVI HDTSVPAPVF LEEGQDMFSE LLDLSIIHDN  300
NMPRTPSYDL IENSELYLEL QDLTAPLAPP PAENGSDSYL SNQGHFDLST ANDDDPFGFS  360
AFM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A1e-26610915116Stress-induced transcription factor NAC1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.194260.0root
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in the epidermal cells of the root apical region. {ECO:0000269|PubMed:20388856}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that binds specific DNA sequences on the promoter regions of target genes. {ECO:0000250|UniProtKB:Q9C8W9}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00129721001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1895540.0AC189554.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH006C14, complete sequence.
GenBankAC2409980.0AC240998.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB022F09, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022566676.10.0NAC domain-containing protein 82-like isoform X2
SwissprotQ9FY821e-154NAC82_ARATH; NAC domain-containing protein 82
TrEMBLM4CP810.0M4CP81_BRARP; Uncharacterized protein
STRINGBra006019.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM36922562
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G09330.41e-142NAC domain containing protein 82
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Deeken R, et al.
    Identification of Arabidopsis thaliana phloem RNAs provides a search criterion for phloem-based transcripts hidden in complex datasets of microarray experiments.
    Plant J., 2008. 55(5): p. 746-59
    [PMID:18485061]
  3. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  4. Ohbayashi I, et al.
    Evidence for a Role of ANAC082 as a Ribosomal Stress Response Mediator Leading to Growth Defects and Developmental Alterations in Arabidopsis.
    Plant Cell, 2017. 29(10): p. 2644-2660
    [PMID:28899981]