PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00129740001
Common NameGSBRNA2T00129740001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family EIL
Protein Properties Length: 330aa    MW: 38103.7 Da    PI: 4.7124
Description EIL family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00129740001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1EIN3152.84.2e-47241331113
                          XXXXXXXXXXXXXXXXXXXXXXX..XXXXX.XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
                 EIN3   1 eelkkrmwkdqmllkrlkerkkqlledkeaatgakksnksneqarrkkmsraQDgiLkYMlkemevcnaqGfvYgiipekgkpvegasds 90 
                          ++lk+rmwkd++l+++lk++k+++    ++ ++    +++ e++rrkkm+r+QD++LkYM+k+mevc+a+GfvYgi+p+kgkp +g+sds
  GSBRNA2T00129740001  24 DDLKRRMWKDRNLMEKLKQQKRHSN---DV-VSL--ASHRAEASRRKKMARSQDSVLKYMMKIMEVCKAKGFVYGIVPDKGKPITGSSDS 107
                          79********************964...44.333..4589************************************************** PP

                          XXXXXXXXXXXXXXXXXXXXXX...X CS
                 EIN3  91 LraWWkekvefdrngpaaisky...q 113
                          Lr+WWke v+fd+++p+a+s+y   +
  GSBRNA2T00129740001 108 LRRWWKETVQFDQTAPNAVSDYltiA 133
                          **********************7542 PP
2EIN335.42.1e-11144222219290
                          GGHHHHHHTTTTSSSSTTT--SHHHHHHHHHHTTTTT-S--XXXX..XX.....XXXX.XXXXXXXXXXXXXXXXXXXXX CS
                 EIN3 219 ptieeirelerqskylqdkmsakesfallsvlnqeekecatvsah..ss.....slrk.qspkvtlsceqkedvegkkes 290
                          + + ++r+l+ qsk+lqdkm+ake++++++vlnqee++++ ++ +  s      s +k +++  +++ ++  ++++++e+
  GSBRNA2T00129740001 144 EPSRRVRRLATQSKCLQDKMMAKETDTWSRVLNQEEALLN-IKDRkiSDqdqeaSGSKtKRKCDFMEPSKRPRSDVTQEP 222
                          56789*******************************9874.322212112222211121222222222222233333333 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF048735.6E-4624135No hitNo description
Gene3DG3DSA:1.10.3180.101.2E-1160183IPR023278Ethylene insensitive 3-like protein, DNA-binding domain
SuperFamilySSF1167682.09E-8109182IPR023278Ethylene insensitive 3-like protein, DNA-binding domain
PfamPF048734.3E-7146179No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 330 aa     Download sequence    Send to blast
MVEVEELEPL TPVEEEEEEV ISYDDLKRRM WKDRNLMEKL KQQKRHSNDV VSLASHRAEA  60
SRRKKMARSQ DSVLKYMMKI MEVCKAKGFV YGIVPDKGKP ITGSSDSLRR WWKETVQFDQ  120
TAPNAVSDYL TIAAAAAAEM IEKEPSRRVR RLATQSKCLQ DKMMAKETDT WSRVLNQEEA  180
LLNIKDRKIS DQDQEASGSK TKRKCDFMEP SKRPRSDVTQ EPRQITGDMI SMLVTSPSIG  240
TNTTSEDDYS VSSSAMGKPD DYDSNWMDYL WFERMQPEFN SSRRFDDDED NPMVLNQSTE  300
SNQSDNVSQS IFSVWDMGCE DKDIYMFDY*
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor that may be involved in the ethylene response pathway. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00129740001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1553420.0AC155342.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH052O08, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022553100.10.0putative ETHYLENE INSENSITIVE 3-like 4 protein
SwissprotQ9LX169e-74EIL4_ARATH; Putative ETHYLENE INSENSITIVE 3-like 4 protein
TrEMBLM4CPB20.0M4CPB2_BRARP; Uncharacterized protein
STRINGBra006050.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16143412
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G10120.11e-65EIL family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  3. Jeong HJ,Choi JY,Shin HY,Bae JM,Shin JS
    Seed-specific expression of seven Arabidopsis promoters.
    Gene, 2014. 553(1): p. 17-23
    [PMID:25261846]