PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00129813001
Common NameGSBRNA2T00129813001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family MYB
Protein Properties Length: 846aa    MW: 94958.9 Da    PI: 5.6057
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00129813001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding409.2e-133775948
                         HHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  9 dellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                         de+l +av+ + g++Wk+Ia+++   Rt+ qc +rwqk+l
  GSBRNA2T00129813001 37 DEILRKAVHNFKGKNWKKIAEYFK-DRTDVQCLHRWQKVL 75
                         89*********************9.************986 PP
2Myb_DNA-binding63.15.6e-2081127148
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                          +g+WT+eEd+ +v++++++G++ W+tIar+++ gR +kqc++rw+++l
  GSBRNA2T00129813001  81 KGPWTKEEDDMIVQLIQKYGPKKWSTIARYLP-GRIGKQCRERWHNHL 127
                          79******************************.*************97 PP
3Myb_DNA-binding42.21.8e-13133175145
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                          + +WT+eE++ l++a++ +G++ W+   + ++ gR+++ +k++w+
  GSBRNA2T00129813001 133 KEAWTQEEELVLIRAHQVYGNR-WAELTKFLP-GRSDNGIKNHWH 175
                          579*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129411.3532475IPR017930Myb domain
SMARTSM007173.0E-52877IPR001005SANT/Myb domain
SuperFamilySSF466898.61E-143790IPR009057Homeodomain-like
CDDcd001673.99E-93775No hitNo description
PfamPF002491.4E-103775IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.0E-203791IPR009057Homeodomain-like
PROSITE profilePS5129432.27476131IPR017930Myb domain
SuperFamilySSF466892.85E-3178174IPR009057Homeodomain-like
SMARTSM007174.9E-1980129IPR001005SANT/Myb domain
PfamPF002494.1E-1881127IPR001005SANT/Myb domain
CDDcd001672.09E-1683127No hitNo description
Gene3DG3DSA:1.10.10.605.3E-2792134IPR009057Homeodomain-like
PROSITE profilePS5129417.977132182IPR017930Myb domain
SMARTSM007174.0E-12132180IPR001005SANT/Myb domain
PfamPF002491.5E-11133175IPR001005SANT/Myb domain
CDDcd001672.70E-9135175No hitNo description
Gene3DG3DSA:1.10.10.604.1E-20135182IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 846 aa     Download sequence    Send to blast
MESECATTIS TPPPDGLTEG NPPKSRQGTE LHDNQFDEIL RKAVHNFKGK NWKKIAEYFK  60
DRTDVQCLHR WQKVLNPELV KGPWTKEEDD MIVQLIQKYG PKKWSTIARY LPGRIGKQCR  120
ERWHNHLNPA INKEAWTQEE ELVLIRAHQV YGNRWAELTK FLPGRSDNGI KNHWHSSVKK  180
KLDSYMSSGL LDQYQAMPLA PYERSSISLD CNGCVSGQAE KEVENCQISS VAGCSISARD  240
YQNGMINMEH HFHPCENYHK NEYYYPELEN ISVSISELSY DMEDCSQFPD HNVSSQDYHF  300
DFQELSDISL EMRHSMSELP MPYAKESKEA SLGGANSTSN RDVATYTNTA NVSETECCRI  360
LFVDQESEGL SVSRPSTQEP NEVSSTKSPM QSSSSKSIAT SASGKETLRP APLIISPDKY  420
SKKSSELICH PLEAEPNSMT SVNGTFITCA NNSSEEDQSY HLNDSKKLVP VNDFASLAEV  480
KPHSLPKHEP AEQQHHEDMG ASSSSLSFPS LDLPVFNSDL LQSKNDPLHD YSPLGIRKLL  540
MSTMTCMSPL RLWESPTGKK TLVGAKSILR KRTRDLLTPL SEKRSDKKLE IDIAASLSKD  600
FSRLDVMFDE SESREDSMSL EKPEQSCLDA SVKEKGVENV ESVSAVLCES NTNKQVLSPP  660
GQSVSKSEKA QVSTPRNHLH SSASLCLVIN SPSRARNTEG HHVDNETRNE NFSIFCGTPF  720
RRGLESPSAW KSPFYVNSLL HSPRFDTDIT IEDMGYIFSP GERSYGSIGL MTQRDEHTSA  780
FAAFDAMEVS LSASNYDDAR KMKELDKENN DPLLAERRVL DFNDCESPTK VTEEPSSSYL  840
LKGCR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C1e-653718214159MYB PROTO-ONCOGENE PROTEIN
1h89_C1e-653718214159MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed in the root quiescent center (PubMed:15937229). Accumulates in division zone of primary root tips and emerging lateral roots. Also present in floral organs in young flower buds. Weakly and uniformly present in the developing embryo and maternal tissues (PubMed:17287251). Expressed specifically in proliferating stage of leaves (PubMed:26069325). {ECO:0000269|PubMed:15937229, ECO:0000269|PubMed:17287251, ECO:0000269|PubMed:26069325}.
UniprotTISSUE SPECIFICITY: Expressed in roots, cotyledons and leaves, especially in vascular tissues, and in flowers. {ECO:0000269|PubMed:17287251}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds 5'-AACGG-3' motifs in gene promoters (PubMed:21862669). Involved in the regulation of cytokinesis, probably via the activation of several G2/M phase-specific genes transcription (e.g. KNOLLE) (PubMed:17287251, PubMed:21862669, PubMed:25806785). Required for the maintenance of diploidy (PubMed:21862669). {ECO:0000269|PubMed:17287251, ECO:0000269|PubMed:21862669, ECO:0000269|PubMed:25806785}.; FUNCTION: Involved in transcription regulation during induced endoreduplication at the powdery mildew (e.g. G.orontii) infection site, thus promoting G.orontii growth and reproduction. {ECO:0000269|PubMed:20018666}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00129813001
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Slightly induced by salicylic acid (SA) (PubMed:16463103). Expressed in a cell cycle-dependent manner, with highest levels 2 hours before the peak of mitotic index in cells synchronized by aphidicolin. Activated by CYCB1 (PubMed:17287251). Accumulates at powdery mildew (e.g. G.orontii) infected cells. {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:17287251}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2324500.0AC232450.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB010H02, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009131211.10.0PREDICTED: myb-related protein 3R-1-like
RefseqXP_013726176.10.0transcription factor MYB3R-4-like
SwissprotQ94FL90.0MB3R4_ARATH; Transcription factor MYB3R-4
TrEMBLM4CPG40.0M4CPG4_BRARP; Uncharacterized protein
STRINGBra006102.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM132131828
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11510.10.0myb domain protein 3r-4
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  3. Saito T, et al.
    Genetic interaction between G2/M phase-specific transcription factor MYB3R4 and MAPKKK ANP3 for execution of cytokinesis in Arabidopsis thaliana.
    Plant Signal Behav, 2015. 10(3): p. e990817
    [PMID:25806785]
  4. Kobayashi K, et al.
    Transcriptional repression by MYB3R proteins regulates plant organ growth.
    EMBO J., 2015. 34(15): p. 1992-2007
    [PMID:26069325]
  5. Chen P, et al.
    Arabidopsis R1R2R3-Myb proteins are essential for inhibiting cell division in response to DNA damage.
    Nat Commun, 2017. 8(1): p. 635
    [PMID:28935922]