PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00129913001
Common NameGSBRNA2T00129913001, LOC106431895
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family NAC
Protein Properties Length: 249aa    MW: 28229.7 Da    PI: 9.8131
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00129913001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM166.87.5e-52141381128
                  NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 
                          lppGfrFhPtdeelvv+yLk+kv +++l++ ++i++vd++k++Pw+Lp +    eke yfFs+r+ ky++g+r+nrat+sgyWkatg dk
  GSBRNA2T00129913001  14 LPPGFRFHPTDEELVVQYLKRKVFSSPLPA-SIIPDVDVCKADPWHLPGN---LEKERYFFSTREAKYPNGNRSNRATESGYWKATGIDK 99 
                          79****************************.89***************44...4789********************************9 PP

                  NAM  91 evlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                          +v+++ +++ vglkktLvfykg+ p+g++tdW+mheyrl
  GSBRNA2T00129913001 100 RVVTSrGNQIVGLKKTLVFYKGKPPHGSRTDWIMHEYRL 138
                          9998857777***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.83E-6010160IPR003441NAC domain
PROSITE profilePS5100558.6314160IPR003441NAC domain
PfamPF023651.8E-2715138IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 249 aa     Download sequence    Send to blast
MDKTNLAKNG VLRLPPGFRF HPTDEELVVQ YLKRKVFSSP LPASIIPDVD VCKADPWHLP  60
GNLEKERYFF STREAKYPNG NRSNRATESG YWKATGIDKR VVTSRGNQIV GLKKTLVFYK  120
GKPPHGSRTD WIMHEYRLSS SPPSSIGPTQ NWVLCRIFLK KRAGDKNEDE GDNRNLRYNN  180
DQLETITTNQ TEDKTKPIFF DFMRKERTTD LNLLPSSPSS GHASSGVTTE IFSSDEETSS  240
CNSLRRNL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A3e-511216615171NO APICAL MERISTEM PROTEIN
1ut4_B3e-511216615171NO APICAL MERISTEM PROTEIN
1ut7_A3e-511216615171NO APICAL MERISTEM PROTEIN
1ut7_B3e-511216615171NO APICAL MERISTEM PROTEIN
3swm_A3e-511216618174NAC domain-containing protein 19
3swm_B3e-511216618174NAC domain-containing protein 19
3swm_C3e-511216618174NAC domain-containing protein 19
3swm_D3e-511216618174NAC domain-containing protein 19
3swp_A3e-511216618174NAC domain-containing protein 19
3swp_B3e-511216618174NAC domain-containing protein 19
3swp_C3e-511216618174NAC domain-containing protein 19
3swp_D3e-511216618174NAC domain-containing protein 19
4dul_A3e-511216615171NAC domain-containing protein 19
4dul_B3e-511216615171NAC domain-containing protein 19
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.74580.0flower| leaf
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Up-regulated during xylem vessel element differentiation. {ECO:0000269|PubMed:20388856}.
UniprotTISSUE SPECIFICITY: Expressed in xylem and phloem cells in roots and inflorescence stems (PubMed:20388856). Highly expressed in senescent leaves. Expressed in roots, and abscission and dehiscence tissues, such as axils of bracts and abscission zones in cauline leaves and siliques (PubMed:21673078). {ECO:0000269|PubMed:20388856, ECO:0000269|PubMed:21673078}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional repressor that negatively regulates the expression of genes involved in xylem vessel formation. Represses the transcriptional activation activity of NAC030/VND7, which regulates protoxylem vessel differentiation by promoting immature xylem vessel-specific genes expression (PubMed:20388856). Transcriptional activator that regulates the COLD-REGULATED (COR15A and COR15B) and RESPONSIVE TO DEHYDRATION (LTI78/RD29A and LTI65/RD29B) genes by binding directly to their promoters. Mediates signaling crosstalk between salt stress response and leaf aging process (PubMed:21673078). May play a role in DNA replication of mungbean yellow mosaic virus (PubMed:24442717). {ECO:0000269|PubMed:20388856, ECO:0000269|PubMed:21673078, ECO:0000269|PubMed:24442717}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00129913001
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By abscisic acid (ABA) and salt stress. {ECO:0000269|PubMed:21673078}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3528170.0AK352817.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-04-E01.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013728186.10.0NAC domain-containing protein 83
SwissprotQ9FY931e-143NAC83_ARATH; NAC domain-containing protein 83
TrEMBLA0A3P5ZEX20.0A0A3P5ZEX2_BRACM; Uncharacterized protein
STRINGBra006186.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM18062786
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13180.11e-142NAC domain containing protein 83
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]