PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00129957001
Common NameGSBRNA2T00129957001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family NAC
Protein Properties Length: 209aa    MW: 23843.2 Da    PI: 9.9946
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00129957001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM101.61.1e-31151411128
                  NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyat.gkrknratksgyWkatgkd 89 
                          lp+G+rFhPt++el+ +yL +k+ +++l+  ++i+ +d++ ++P ++p   ++ee++ yfF+k++++ ++ ++r + +  +gyWk   k+
  GSBRNA2T00129957001  15 LPVGYRFHPTEQELILHYLLPKAFASPLPS-SIIPVFDVFFSHPLTFPG--DQEERQRYFFCKKRQEVSSnDHRIKISSGNGYWKPIRKE 101
                          799*************************99.88***************3..4577899*****99988751666666899********** PP

                  NAM  90 kevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128
                          +++++  g++vg+++tLvf   ++++++++kt+W+m ey l
  GSBRNA2T00129957001 102 RDITA-CGRTVGIRRTLVFRgtNNSSSSSNKTRWCMTEYCL 141
                          *****.99***********96556778889*********87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.01E-398161IPR003441NAC domain
PROSITE profilePS5100535.98115161IPR003441NAC domain
PfamPF023656.2E-2016141IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 209 aa     Download sequence    Send to blast
MEVDKSIMVN GGMKLPVGYR FHPTEQELIL HYLLPKAFAS PLPSSIIPVF DVFFSHPLTF  60
PGDQEERQRY FFCKKRQEVS SNDHRIKISS GNGYWKPIRK ERDITACGRT VGIRRTLVFR  120
GTNNSSSSSN KTRWCMTEYC LAGFSSTKMF GEWAVYKVYK RKEPKGRRQR KPRVRDAEEE  180
EFTIGSNHEF GPPPPSPPTS ADESGSII*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A4e-191316213169Stress-induced transcription factor NAC1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00129957001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009131374.11e-153PREDICTED: NAC domain-containing protein 41-like
TrEMBLA0A397ZSA91e-151A0A397ZSA9_BRACM; Uncharacterized protein
TrEMBLM4CPU01e-151M4CPU0_BRARP; Uncharacterized protein
STRINGBra006229.1-P1e-152(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM78742541
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G14000.11e-108NAC domain containing protein 84
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]