PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00129972001
Common NameGSBRNA2T00129972001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C2H2
Protein Properties Length: 260aa    MW: 29583.6 Da    PI: 9.4073
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00129972001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.88.5e-0592114223
                          EETTTTEEESSHHHHHHHHHH.T CS
              zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                          +C+ C+++++++ +L  Hi+  H
  GSBRNA2T00129972001  92 SCSVCSRVYPTSRLLSIHISEaH 114
                          6******************9888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003550.0946489IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002806689IPR007087Zinc finger, C2H2
SMARTSM00355591114IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028093114IPR007087Zinc finger, C2H2
SMARTSM003550.091129154IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280131154IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 260 aa     Download sequence    Send to blast
MAMGMAELGF PYWNPLRRRF PPDSPFFASG NVERELLAKQ VALDFTEDEI NNLQIIVETE  60
SRRISCPIVG CPERLKSLDN FEDHYKARHT ASCSVCSRVY PTSRLLSIHI SEAHDSFFQA  120
KVARGYDMYE CLVEGCGLKF KNYKARHRHL VDKHKFPTTF EFFKRTQLSK KRREKLQKQR  180
VPKLKHEEDK EEASSDAMEV EDKASLDGLV SALSTLTTSD TTPSNVSFGR RHGRGLTFVP  240
RSVHREKPTN SSSTPGPKT*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1169174KKRREK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.59850.0seed
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00129972001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4937480.0AB493748.1 Arabidopsis thaliana At5g14140 mRNA for hypothetical protein, partial cds, clone: RAAt5g14140.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013727124.20.0zinc finger protein 511-like isoform X1
TrEMBLM4CPV10.0M4CPV1_BRARP; Uncharacterized protein
STRINGBra006240.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM99712632
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G14140.11e-165zinc ion binding;nucleic acid binding;zinc ion binding
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]