PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00130049001
Common NameGSBRNA2T00130049001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C2H2
Protein Properties Length: 368aa    MW: 41135.3 Da    PI: 8.0205
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00130049001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.40.000116285123
                         EEETTTTEEESSHHHHHHHHHH.T CS
              zf-C2H2  1 ykCpdCgksFsrksnLkrHirt.H 23
                         ++C+ Cgk F+    L +H+   H
  GSBRNA2T00130049001 62 FRCGECGKGFRYEKCLSNHQAGaH 85
                         89*****************98666 PP
2zf-C2H210.70.0016320342123
                          EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                          ++C  C+k+Fs+   L  H+ +H
  GSBRNA2T00130049001 320 HQCRLCSKVFSSYQALGGHQTSH 342
                          79**************9999988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5015710.9076290IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.605.4E-46281IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.0996285IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002806485IPR007087Zinc finger, C2H2
SuperFamilySSF576672.35E-5317346No hitNo description
PROSITE profilePS5015710.388320347IPR007087Zinc finger, C2H2
PfamPF139127.6E-9320343IPR007087Zinc finger, C2H2
SMARTSM003550.061320342IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280322342IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 368 aa     Download sequence    Send to blast
MEEQHQRGVL RPLKNTHSPK EDAPTRQKRE LSCYYGLRQN PKKTTHKSFA LESSEPRKKI  60
LFRCGECGKG FRYEKCLSNH QAGAHLSTVQ RVCEESIKSL CGSFSLVRKK KRSSRVVRYK  120
KTSFTTFLGS SSVFGESDEE LEVAECLILL SKSSPKIVVD RGKLVGEATD AIPERLNGYL  180
RGKKVRRAAE FEYGFLREEK KLLEEGESNE IDQQLVGEAM EAVPETIHGY LRGKKLEERV  240
SIHEASKEPA SFLGGSSEID QQEQRRACGF DSVMISGYET WKEAASFLGH KFELGIGALE  300
CSDSDDEIVT ESSGKGNAEH QCRLCSKVFS SYQALGGHQT SHRMSKSKSK KSCREESVEL  360
DDDAAQV*
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00130049001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2325390.0AC232539.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH003M07, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009131468.10.0PREDICTED: uncharacterized protein LOC103856137
RefseqXP_013738719.10.0uncharacterized protein BNAA03G05440D
TrEMBLM4CQ130.0M4CQ13_BRARP; Uncharacterized protein
STRINGBra006302.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM75191630
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15480.15e-75C2H2 family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]