PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00130822001

Common Name

GSBRNA2T00130822001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

HSF

Protein Properties

Length: 151aa MW: 17488.1 Da PI: 6.7993

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00130822001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	57.3	4.3e-18	6	95	2	99
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESX.XXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhks.Fkkgkke 92 F + +ye+++d++l+++isws++++sfv++d++e+ +k+Lp+ h +++ F+ +++YgF +++ +e+ eF h++ F +gk e GSBRNA2T00130822001 6 FYSDIYEVVDDPSLDSIISWSKSNKSFVIWDQKELVEKILPRLL-HYKLSHFITEIEIYGFVRIEGSEH--------LEFGHEQyFVRGKPE 88 8899***********************************985.88999**********99996........69989** PP XXXXXXX CS HSF_DNA-bind 93 llekikr 99 ll+k++ GSBRNA2T00130822001 89 LLTKMRY 95 99875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00415	3.2E-20	2	96	IPR000232	Heat shock factor (HSF)-type, DNA-binding
Gene3D	G3DSA:1.10.10.10	1.4E-20	3	94	IPR011991	Winged helix-turn-helix DNA-binding domain
SuperFamily	SSF46785	1.97E-18	3	94	IPR011991	Winged helix-turn-helix DNA-binding domain
PRINTS	PR00056	4.9E-6	6	29	IPR000232	Heat shock factor (HSF)-type, DNA-binding
Pfam	PF00447	7.2E-18	6	94	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	4.9E-6	56	68	IPR000232	Heat shock factor (HSF)-type, DNA-binding

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 151 aa Download sequence Send to blast
MGMSSFYSDI YEVVDDPSLD SIISWSKSNK SFVIWDQKEL VEKILPRLLH YKLSHFITEI 60 EIYGFVRIEG SEHLEFGHEQ YFVRGKPELL TKMRYQAVGR YVPIRYKTQM EETQANQAHI 120 LKHYKITNQE LGISSLGDAI VCRIAARDAL *

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Bna.19089	1e-123	flower\| seed

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00130822001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC189529	4e-31	AC189529.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB092P05, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009120089.1	4e-65	PREDICTED: heat stress transcription factor A-4a-like
Refseq	XP_013666914.1	4e-65	heat stress transcription factor A-4a
TrEMBL	A0A3P6FK49	3e-93	A0A3P6FK49_BRAOL; Uncharacterized protein
STRING	Bo1g007320.1	3e-78	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5067	14	50

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G19630.1	4e-23	HSF family protein

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]