PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00131044001
Common NameGSBRNA2T00131044001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family GRAS
Protein Properties Length: 490aa    MW: 54377.6 Da    PI: 4.8376
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00131044001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS322.49.4e-991224882374
                 GRAS   2 velLlecAeavssgdlelaqalLarlsel.aspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPi 90 
                          ve L++++++v+s++l+laq +L+rl+++ +sp+g+p+qR+a+yf+eAL + l++s  +  + l+++++     ++++ a+k fs +sPi
  GSBRNA2T00131044001 122 VEDLIRVVDCVESDELQLAQVILSRLNQRlRSPAGRPLQRAAFYFKEALGSLLTGSNRNQTRLLSSWTE----IVQKIRAVKEFSGISPI 207
                          688*************************99*************************55555554444444....8**************** PP

                 GRAS  91 lkfshltaNqaIleavege.....ervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvp 175
                          + fsh+taNqaIl++++++       vH++Dfdi+ G+Q+++L++++a+++ ++  lR+T+v+++e   + e++ ++e+L++fA+e++++
  GSBRNA2T00131044001 208 PLFSHFTANQAILDSLSSQqssssPFVHVVDFDIGFGGQYASLMREIAEKSISSGFLRVTAVVAEE--CAVETRLVKENLTQFAAEMKIR 295
                          ****************99867766789*************************************66..9********************* PP

                 GRAS 176 fefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqe..adh.nsesFlerfleale 262
                          f+++++++k++e+l+++++r+  gE ++V ++ +++r l       s + e++  ++++ Pkvvv+v++e  ++  +++sF ++f+ ale
  GSBRNA2T00131044001 296 FQIEFVLMKTFEMLSFKAIRFVDGERTVVLISPAIFRRL-------SGIAEFVTNLRRVFPKVVVFVDSEgwTEIaGAGSFRREFVTALE 378
                          **************************************9.......44567*******************766668999*********** PP

                 GRAS 263 yysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrve 352
                          +y+++++sl+a +p+ +  ++ vE+++l+++i  +v +    r  r+   ++Wre++  aG+++++ls++a  qa++ll+k +++g++v 
  GSBRNA2T00131044001 379 FYTMVLESLDAAAPPGDLVKKIVEAFVLRPKIAAAVETTAGGR--RNVGEMTWREAFCGAGMRSIQLSQFAIFQAECLLEKAQVRGFHVA 466
                          ************************************9999884..66677**************************************** PP

                 GRAS 353 eesgslvlgWkdrpLvsvSaWr 374
                          +++++lvl+W++r+Lv++SaWr
  GSBRNA2T00131044001 467 KRQEELVLCWHGRALVATSAWR 488
                          *********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098540.35495468IPR005202Transcription factor GRAS
PfamPF035143.2E-96122488IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 490 aa     Download sequence    Send to blast
MKVQASSPQD NQPSNTNSTD NNNNNNQIPS MDEHVMRSMD WDSIMKELEL DDDSTPNPLK  60
TEFTTTDSAI GPLYAVDSNL PGFPDQIQPS DFDSSDAYQN QTAGYGFTSL DSVDNGGGFD  120
FVEDLIRVVD CVESDELQLA QVILSRLNQR LRSPAGRPLQ RAAFYFKEAL GSLLTGSNRN  180
QTRLLSSWTE IVQKIRAVKE FSGISPIPLF SHFTANQAIL DSLSSQQSSS SPFVHVVDFD  240
IGFGGQYASL MREIAEKSIS SGFLRVTAVV AEECAVETRL VKENLTQFAA EMKIRFQIEF  300
VLMKTFEMLS FKAIRFVDGE RTVVLISPAI FRRLSGIAEF VTNLRRVFPK VVVFVDSEGW  360
TEIAGAGSFR REFVTALEFY TMVLESLDAA APPGDLVKKI VEAFVLRPKI AAAVETTAGG  420
RRNVGEMTWR EAFCGAGMRS IQLSQFAIFQ AECLLEKAQV RGFHVAKRQE ELVLCWHGRA  480
LVATSAWRF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A3e-2812748724377Protein SCARECROW
5b3h_D3e-2812748724377Protein SCARECROW
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in seedlings, roots, leaves and flowers. {ECO:0000269|PubMed:18500650}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00131044001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013601834.10.0PREDICTED: scarecrow-like protein 15
SwissprotO232100.0SCL15_ARATH; Scarecrow-like protein 15
TrEMBLA0A0D3A1H10.0A0A0D3A1H1_BRAOL; Uncharacterized protein
TrEMBLA0A3P6F6V90.0A0A3P6F6V9_BRAOL; Uncharacterized protein
STRINGBo1g005470.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM42912857
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36710.10.0GRAS family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]