PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00131124001

Common Name

GSBRNA2T00131124001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

GeBP

Protein Properties

Length: 280aa MW: 31376.1 Da PI: 7.6744

Description

GeBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00131124001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF573	45.8	1.7e-14	84	123	9	48
DUF573 9 eeDeivlLqGlidfkaktgkspsddidafyefvkksisfk 48 ++Dei++LqG+idfk++tg sp+dd++a y+f+kksis++ GSBRNA2T00131124001 84 DNDEIAVLQGMIDFKKDTGNSPYDDTNAYYDFIKKSISIE 123 79***********************************975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04504	7.9E-9	84	122	IPR007592	Protein of unknown function DUF573
Gene3D	G3DSA:1.25.10.10	5.4E-8	146	241	IPR011989	Armadillo-like helical
SuperFamily	SSF48371	1.32E-8	147	240	IPR016024	Armadillo-type fold
CDD	cd00020	8.62E-5	148	237	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005488	Molecular Function	binding

Sequence ? help Back to Top
Protein Sequence Length: 280 aa Download sequence Send to blast
MCATLKTIVL VFLLCFVALP LEKKLIIFHQ RKKKTTSPTL LPPPSLQSPG EVSAAPSEGT 60 SKETNSKQAK KDDEKRDTWN SPYDNDEIAV LQGMIDFKKD TGNSPYDDTN AYYDFIKKSI 120 SIEDLMGWLL SPTACRKRES RREEEKRACH AIGLIGVTRR CRGLLVEARV VPALVDLFRD 180 GDEKGKILAG NALEIIAAQT EYIRLVTEAG SIPLYVELLS GGDSMGKDIV EDVFSILECL 240 FVTFVSCRCL YIHTCTKRVS NQWRWSNHLT NRAPYHEIS*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Bna.13056	9e-44	microspore\| seed

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00131124001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A3P6FLA3	0.0	A0A3P6FLA3_BRAOL; Uncharacterized protein
STRING	Bo1g004750.1	1e-140	(Brassica oleracea)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G61730.1	3e-15	DNA-binding storekeeper protein-related transcriptional regulator

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]