PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00131136001

Common Name

GSBRNA2T00131136001, LOC106426843

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

M-type_MADS

Protein Properties

Length: 204aa MW: 23913.7 Da PI: 8.8832

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00131136001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	57.3	2e-18	11	57	3	49
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 i + +r++ f+kR+ g+lKKA+EL +LCd++ +i fs++gkl+ + GSBRNA2T00131136001 11 IVDRQQRNIAFAKRKSGLLKKAYELFILCDVQMVLIFFSPSGKLFLF 57 678899**************************************876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50066	24.137	1	61	IPR002100	Transcription factor, MADS-box
SMART	SM00432	2.5E-22	1	60	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	8.24E-23	2	83	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	2.1E-18	3	23	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	4.7E-18	10	57	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	2.1E-18	23	38	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	2.1E-18	38	59	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 204 aa Download sequence Send to blast
MGRVKIQMRK IVDRQQRNIA FAKRKSGLLK KAYELFILCD VQMVLIFFSP SGKLFLFDTK 60 TRMEETIKKY VDVPIRPRLQ VQEEAFIRRW IDIMRIESQY PESIVRPREN FGDGILSQAR 120 SKEIEDEISK CKAEMAKVEQ QLGYFLKHPN QWTTRDDIEY QEKILEETLD KVRSRKKCLE 180 AQNEAFDASN CLLQTDVEIS PSG*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6byy_A	3e-16	1	72	1	71	MEF2 CHIMERA
6byy_B	3e-16	1	72	1	71	MEF2 CHIMERA
6byy_C	3e-16	1	72	1	71	MEF2 CHIMERA
6byy_D	3e-16	1	72	1	71	MEF2 CHIMERA
6bz1_A	4e-16	1	72	1	71	MEF2 CHIMERA
6bz1_B	4e-16	1	72	1	71	MEF2 CHIMERA
6bz1_C	4e-16	1	72	1	71	MEF2 CHIMERA
6bz1_D	4e-16	1	72	1	71	MEF2 CHIMERA
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00131136001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013723026.1	1e-149	agamous-like MADS-box protein AGL66
TrEMBL	A0A3P6FJD6	1e-147	A0A3P6FJD6_BRAOL; Uncharacterized protein
STRING	Bra011763.1-P	1e-114	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM17254	9	10

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G77950.2	4e-29	AGAMOUS-like 67

Link Out ? help Back to Top
Entrez Gene	106426843

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]