PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00131332001
Common NameGSBRNA2T00131332001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family ERF
Protein Properties Length: 260aa    MW: 29390.9 Da    PI: 5.4694
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00131332001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.11.1e-18108158255
                  AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                          +y+GVr+++ +g+++AeIrd + ng   r++lg+f taeeAa a+++a+ +++g
  GSBRNA2T00131332001 108 KYRGVRRRP-WGKFAAEIRDSTRNG--VRVWLGTFHTAEEAAMAYDKAAVRIRG 158
                          8********.**********44465..**********************99997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.109.6E-29107167IPR001471AP2/ERF domain
PfamPF008476.7E-12108158IPR001471AP2/ERF domain
SMARTSM003804.3E-35108173IPR001471AP2/ERF domain
CDDcd000185.88E-28108167No hitNo description
SuperFamilySSF541712.75E-20108168IPR016177DNA-binding domain
PROSITE profilePS5103222.576108167IPR001471AP2/ERF domain
PRINTSPR003671.0E-10109120IPR001471AP2/ERF domain
PRINTSPR003671.0E-10132148IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 260 aa     Download sequence    Send to blast
MAFGNIQEPD GEILKNVWEN FIRKPETDTR SVHVQEVSTT WEALPTLDDI SKESKGSLPT  60
IDMSMEAKEW AEILDSIASF PSETNHEPLT NPTGSRSLPS SVSCKTRKYR GVRRRPWGKF  120
AAEIRDSTRN GVRVWLGTFH TAEEAAMAYD KAAVRIRGVQ RAHTNFQLET VIKAMEMDCG  180
SSYYPINRSS SSQPLRNHCE IEKEAIRAWT SVDWLGTKKL VETDYKKTAS RGEDKCDVFG  240
LFEFEEFGSD YLDTLLSSF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A7e-24105168264ATERF1
3gcc_A7e-24105168264ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00131332001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013668857.11e-175ethylene-responsive transcription factor ERF091-like
SwissprotO495151e-122ERF91_ARATH; Ethylene-responsive transcription factor ERF091
TrEMBLA0A398AK231e-177A0A398AK23_BRACM; Uncharacterized protein
STRINGBra013310.1-P1e-168(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18450.11e-107ERF family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]