PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00131362001

Common Name

GSBRNA2T00131362001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

HD-ZIP

Protein Properties

Length: 253aa MW: 28179.3 Da PI: 7.6066

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00131362001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	55.5	9.7e-18	188	240	2	54
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRak 54 rk+ +++k+q Le+ F+++++++ +++ LAk+l+L rqV vWFqNrRa+ GSBRNA2T00131362001 188 RKKLRLSKDQSAFLEDSFKEHSTLNPKQKIALAKQLNLRPRQVEVWFQNRRAR 240 778899**********************************************8 PP
2	HD-ZIP_I/II	83.1	3.9e-27	188	241	1	54
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARt 54 +kk+rlsk+q+++LE+sF+e+++L+p++K +la++L+l+prqv+vWFqnrRAR GSBRNA2T00131362001 188 RKKLRLSKDQSAFLEDSFKEHSTLNPKQKIALAKQLNLRPRQVEVWFQNRRARL 241 69***************************************************6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.1E-17	172	238	IPR009057	Homeodomain-like
SuperFamily	SSF46689	3.72E-17	179	241	IPR009057	Homeodomain-like
PROSITE profile	PS50071	16.196	184	244	IPR001356	Homeobox domain
SMART	SM00389	3.6E-16	186	248	IPR001356	Homeobox domain
Pfam	PF00046	4.2E-15	188	240	IPR001356	Homeobox domain
CDD	cd00086	6.81E-16	188	241	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 253 aa Download sequence Send to blast
MELALCLGDN TNKFSFMEKP SKTNNNPSAS STSTSDKDLG FNMGLNVLGF GGHRSLSSSS 60 SPSMEDEKDK NKRKLAPKAI DSDGFRVSSS VDPSLQLQLH FPWLPENSRQ GGRISGAATV 120 PEEEEEAALS MSVSPPDSVT SSFRLDFGIK SYGYERRNNK RDIENDEVER STSRASNEDN 180 DDDNGATRKK LRLSKDQSAF LEDSFKEHST LNPKQKIALA KQLNLRPRQV EVWFQNRRAR 240 LAYVIIASFF FL*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	186	192	TRKKLRL

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00131362001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013606550.1	1e-174	PREDICTED: homeobox-leucine zipper protein HAT14
Refseq	XP_013670853.1	1e-174	homeobox-leucine zipper protein HAT14-like
Swissprot	P46665	1e-113	HAT14_ARATH; Homeobox-leucine zipper protein HAT14
TrEMBL	A0A3N6QC33	1e-173	A0A3N6QC33_BRACR; Uncharacterized protein
STRING	Bo9g175900.1	1e-174	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4928	28	52

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06710.1	1e-101	homeobox from Arabidopsis thaliana

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]