PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00131442001

Common Name

GSBRNA2T00131442001, LOC106437773

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

HSF

Protein Properties

Length: 166aa MW: 19405.5 Da PI: 10.7054

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00131442001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	60.3	5e-19	4	93	2	98
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHH.HHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESX.XXXXXX CS HSF_DNA-bind 2 Flkklyeiledeelkeliswsengnsfvvldeee.fakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhks.Fkkgkk 91 F +yei++d++l+++isws+n++sfv+++++e f+kk+L+++F n++ F+ L++YgF ++k +e+ eF hk+ F +gk GSBRNA2T00131442001 4 FHVAIYEIVDDPSLDSTISWSKNNKSFVIWNPNElFTKKILKRFFC-CNLSQFLTELDTYGFVRIKGSEH--------LEFGHKQyFVRGKP 86 77789************************765389999999885.799************9996........6*989* PP XXXXXXX CS HSF_DNA-bind 92 ellekik 98 ell+k++ GSBRNA2T00131442001 87 ELLKKMR 93 **987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00415	6.1E-23	1	95	IPR000232	Heat shock factor (HSF)-type, DNA-binding
Gene3D	G3DSA:1.10.10.10	2.9E-20	2	93	IPR011991	Winged helix-turn-helix DNA-binding domain
SuperFamily	SSF46785	2.52E-20	3	93	IPR011991	Winged helix-turn-helix DNA-binding domain
PRINTS	PR00056	2.5E-5	4	27	IPR000232	Heat shock factor (HSF)-type, DNA-binding
Pfam	PF00447	2.1E-18	4	93	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	2.5E-5	55	67	IPR000232	Heat shock factor (HSF)-type, DNA-binding

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 166 aa Download sequence Send to blast
MKQFHVAIYE IVDDPSLDST ISWSKNNKSF VIWNPNELFT KKILKRFFCC NLSQFLTELD 60 TYGFVRIKGS EHLEFGHKQY FVRGKPELLK KMRLEAAMNR MKKSAQRAKA RAEAEKNGSV 120 TVRREPRIII NADEARMRYK QIFESSSSST IAKTPLENRF RHLRI*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Bna.5553	0.0	flower\| microspore\| seed

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00131442001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013734202.2	1e-120	heat stress transcription factor A-6a
TrEMBL	A0A3P5ZJS7	1e-119	A0A3P5ZJS7_BRACM; Uncharacterized protein
STRING	Bra013406.1-P	1e-119	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5067	14	50

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G19630.1	1e-24	HSF family protein

Link Out ? help Back to Top
Entrez Gene	106437773

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]