PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00131553001

Common Name

GSBRNA2T00131553001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

Dof

Protein Properties

Length: 246aa MW: 27628.4 Da PI: 9.2944

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00131553001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	104.6	5.6e-33	21	77	5	61
zf-Dof 5 alkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 + cprC s+ntkfC+ynnys+sqPry C++Crr+Wt+GG lrn+P+Gg +rk k++ GSBRNA2T00131553001 21 PQVCPRCSSDNTKFCFYNNYSVSQPRYNCRSCRRFWTHGGVLRNIPIGGRARKVKHT 77 678**************************************************9986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	9.0E-21	16	76	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	5.5E-30	22	76	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	25.993	22	76	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	24	60	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 246 aa Download sequence Send to blast
MDNSNVLVRG NRQVNEEKPP PQVCPRCSSD NTKFCFYNNY SVSQPRYNCR SCRRFWTHGG 60 VLRNIPIGGR ARKVKHTRID QPSVSQVVSV VEQVNNHQSF SHAQETNEFL GTFGGSSSSV 120 AAVGNHFSYS TETHSVMVPP FRSIPPMARF DGSFHQGYYG DGFNDLVGNP LMNQSFGGNV 180 GNYNSYFVNQ EDPNKRNQSF NNSMNMNHSA STSGSREYPG IDYMINNNNK KYVFRSSYHL 240 EKHGP*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Bna.27158	0.0	seed

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00131553001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013647344.1	1e-180	dof zinc finger protein DOF4.4-like
Swissprot	Q9SUA9	6e-71	DOF44_ARATH; Dof zinc finger protein DOF4.4
TrEMBL	A0A3P5ZPH3	1e-179	A0A3P5ZPH3_BRACM; Uncharacterized protein
STRING	Bra013490.1-P	1e-161	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1602	17	89

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G21050.1	8e-59	Dof-type zinc finger domain-containing protein

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]