PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00131605001
Common NameGSBRNA2T00131605001, LOC106440033
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family B3
Protein Properties Length: 723aa    MW: 80670.5 Da    PI: 8.1457
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00131605001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B356.45.4e-18340439198
                          EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS
                   B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldg 86 
                          f+k+l+ sd+++ gr+vlpkk+ae++  +++++ ++ lt+ d++g++W++++++  +++s++y+l+ G     ++ +L++gD+v+F++++
  GSBRNA2T00131605001 340 FEKILSVSDAGRVGRMVLPKKCAEAFlpQISQTDGVPLTVHDSTGKEWTFQFRFwvNNNSRMYFLE-GITPCIQSMQLQAGDTVIFSRVD 428
                          89**************************88899999****************99888888889888.********************776 PP

                          SSEE..EEEEE- CS
                   B3  87 rsefelvvkvfr 98 
                            e++l +++++
  GSBRNA2T00131605001 429 -PEKKLIMGFRK 439
                          .55556666554 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.106.6E-28336444IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.97E-20337439IPR015300DNA-binding pseudobarrel domain
CDDcd100173.19E-21338439No hitNo description
SMARTSM010191.2E-15340441IPR003340B3 DNA binding domain
PfamPF023623.5E-15340439IPR003340B3 DNA binding domain
PROSITE profilePS5086311.237340441IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048366Biological Processleaf development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 723 aa     Download sequence    Send to blast
MLPFPSSSSM TPSSYSARFC FNRECPDFNR ECYRPGWRLR NGDFADLCNR CATAYEQGRF  60
CDIFHQRASG WRCCESCGKR IHCGCVVSAP AFTLLDAGGI ECLTCARKKV SVGPNFRPPP  120
PSFLFQSPIA DKFQDLSIDW NSSTRSYRPP NLSGPSILQS DLHNREDCYE FNQPTSKDKA  180
TAYSTEKHRG MNDLMGRLMS VNSNNHTNSI LYNQKAGPNC KVPTCPNVNA YPPLISLKEG  240
PLGAQRAFPV TTPVETNGHL GLGGRYLWHK DNSSPLSHLH NDVNRGADSP LESKNWNFGI  300
HLDTPGKYQV VPRYSPKIPY KNQVLQNLSN ESVSVVTPLF EKILSVSDAG RVGRMVLPKK  360
CAEAFLPQIS QTDGVPLTVH DSTGKEWTFQ FRFWVNNNSR MYFLEGITPC IQSMQLQAGD  420
TVIFSRVDPE KKLIMGFRKA SVAQSSVQET ELNNNRESCT NGDAEPIDIH PPNGKKKSSM  480
TTTRSKRQKV EKGELSEVKL TWEEAQGFIL PPPNLTPSII TIEGIEFEEY EDAPIIGKPN  540
TGFGSTCSAN GRLLAEQDDE EAKDEAEGLL MSPKSSSKHP RHRNGCTCIV CLQSPSGSSP  600
KHGRRCSCTV CDTVRRRRET LLQRKKKQQQ IEVENKTHKE LESPNSDEER HQSANNSGTT  660
SKDHEPSKAQ IDLNFQPEKD EESPPPRSKT TTKDKSLHHD EASFKPPRSS SSAHNKLHVE  720
SF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j9a_A1e-513154431127B3 domain-containing transcription repressor VAL1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1614625RRRRETLLQRKK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.4667e-96seed
Functional Description ? help Back to Top
Source Description
UniProtMay be involved in plant development. {ECO:0000269|PubMed:17158584}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00131605001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF0322981e-47KF032298.1 Leavenworthia alabamica pop-variant Russellville self-incompatibility gene locus, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013737079.10.0B3 domain-containing transcription factor VAL3 isoform X2
SwissprotO654200.0VAL3_ARATH; B3 domain-containing transcription factor VAL3
TrEMBLM4DAM50.0M4DAM5_BRARP; Uncharacterized protein
STRINGBra013535.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM68572536
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G21550.10.0VP1/ABI3-like 3
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]