PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00132234001
Common NameGSBRNA2T00132234001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family CPP
Protein Properties Length: 324aa    MW: 35739.4 Da    PI: 8.2998
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00132234001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR36.78.7e-125695239
                  TCR  2 ekkgCnCkkskClkkYCeCfaagkkCsee..CkCedCkNk 39
                         ++k+C+CkkskCl++ CeCfaag++Cs e  C+C  C+N 
  GSBRNA2T00132234001 56 SRKRCKCKKSKCLQLKCECFAAGVYCSTEppCSCLYCHNI 95
                         5799***********************9889*******95 PP
2TCR48.31.9e-15145183139
                  TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNk 39 
                          ++++gCnCkks+C kkYCeCf+  + Cs +C+CedCkN+
  GSBRNA2T00132234001 145 RHRRGCNCKKSNCSKKYCECFQGDAGCSIKCRCEDCKNT 183
                          5899**********************************8 PP
3TCR36.78.7e-12193232239
                  TCR   2 ekkgCnCkkskClkkYCeCfaagkkCsee..CkCedCkNk 39 
                          ++k+C+CkkskCl++ CeCfaag++Cs e  C+C  C+N 
  GSBRNA2T00132234001 193 SRKRCKCKKSKCLQLKCECFAAGVYCSTEppCSCLYCHNI 232
                          5799***********************9889*******95 PP
4TCR39.21.4e-12282316135
                  TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCed 35 
                          ++++gCnCkks+C kkYCeCf+  + Cs +C+Ced
  GSBRNA2T00132234001 282 RHRRGCNCKKSNCSKKYCECFQGDAGCSIKCRCED 316
                          5899*****************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011142.6E-105598IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163432.31456185IPR005172CRC domain
PfamPF036382.6E-95894IPR005172CRC domain
SMARTSM011141.3E-14145186IPR033467Tesmin/TSO1-like CXC domain
PfamPF036385.9E-11148183IPR005172CRC domain
SMARTSM011142.6E-10192235IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163429.095193322IPR005172CRC domain
PfamPF036382.6E-9195231IPR005172CRC domain
SMARTSM011145.8E-9282320IPR033467Tesmin/TSO1-like CXC domain
PfamPF036381.6E-8285316IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 324 aa     Download sequence    Send to blast
MKQPNPMNTE TSQPGTTYNG EMDQGNHQGG GVSAAVLKQL KSRTQQTPLE AGEGESRKRC  60
KCKKSKCLQL KCECFAAGVY CSTEPPCSCL YCHNIPIHND TIWASRENIE SRDPLAFTPK  120
IIGRSSDSVQ ETREGDASKT PASGRHRRGC NCKKSNCSKK YCECFQGDAG CSIKCRCEDC  180
KNTFGLEAGE GESRKRCKCK KSKCLQLKCE CFAAGVYCST EPPCSCLYCH NIPIHNDTIW  240
ASRENIESRD PLAFTPKIIG RSSDSVQETR EGDASKTPAS GRHRRGCNCK KSNCSKKYCE  300
CFQGDAGCSI KCRCEDYYKD LAF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A1e-115718211120Protein lin-54 homolog
5fd3_B1e-115718211120Protein lin-54 homolog
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed at the late stage of pollen development in tricellular and mature pollen. {ECO:0000269|PubMed:18057042}.
UniprotTISSUE SPECIFICITY: Ubiquitous but expressed mostly in all the aerial organs with highest expression in flowers. {ECO:0000269|PubMed:10769245, ECO:0000269|PubMed:18057042}.
Functional Description ? help Back to Top
Source Description
UniProtPlays a role in development of both male and female reproductive tissues. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00132234001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013627216.11e-124PREDICTED: uncharacterized protein LOC106333301
RefseqXP_013627217.11e-124PREDICTED: uncharacterized protein LOC106333301
RefseqXP_013680755.11e-124uncharacterized protein LOC106385373
RefseqXP_022554718.11e-124uncharacterized protein LOC106385373
SwissprotF4JIF54e-57TCX2_ARATH; Protein tesmin/TSO1-like CXC 2
TrEMBLA0A0D3B4L61e-116A0A0D3B4L6_BRAOL; Uncharacterized protein
TrEMBLA0A3P6AMJ11e-116A0A3P6AMJ1_BRAOL; Uncharacterized protein
STRINGBo3g026940.11e-117(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1948756
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G14770.12e-34TESMIN/TSO1-like CXC 2
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]