PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00132243001
Common NameGSBRNA2T00132243001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C3H
Protein Properties Length: 390aa    MW: 43322.9 Da    PI: 6.312
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00132243001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH352.5e-114368126
                         --S---SGGGGTS--TTTTT-SS-SS CS
              zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHg 26
                         ++++ C+ff+rtG+C yG++C+++H+
  GSBRNA2T00132243001 43 PGERDCQFFLRTGQCGYGNSCRYNHP 68
                         5789*********************9 PP
2zf-CCCH36.77.2e-1289113327
                          S---SGGGGTS--TTTTT-SS-SSS CS
              zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                          ++ C ++++tG CkyG++Ck++H++
  GSBRNA2T00132243001  89 QPDCEYYLKTGACKYGSTCKYHHPK 113
                          789********************96 PP
3zf-CCCH344.9e-11134157326
                          S---SGGGGTS--TTTTT-SS-SS CS
              zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                          ++ C+++++tG Ck+G  CkF+H+
  GSBRNA2T00132243001 134 EKSCPYYMQTGMCKFGVACKFHHP 157
                          667********************8 PP
4zf-CCCH40.25.6e-13234258327
                          S---SGGGGTS--TTTTT-SS-SSS CS
              zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                          +++Crf++ tGtCkyGd Ck++H++
  GSBRNA2T00132243001 234 RAECRFYMNTGTCKYGDDCKYSHPK 258
                          799********************96 PP
5zf-CCCH30.85e-10279304126
                          --S---SGGGGTS--TTTTT-SS-SS CS
              zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                          ++++ C +f ++G+CkyG++Ck+ H+
  GSBRNA2T00132243001 279 PGQPACGNFKAYGFCKYGPNCKYDHP 304
                          57899********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.8964270IPR000571Zinc finger, CCCH-type
SMARTSM003561.6E-64269IPR000571Zinc finger, CCCH-type
PfamPF006426.0E-94468IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.29E-64670IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.5E-54867IPR000571Zinc finger, CCCH-type
SMARTSM003565.1E-686113IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.80286114IPR000571Zinc finger, CCCH-type
PfamPF006421.7E-989113IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.58E-691114IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.2E-492112IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.14E-6130159IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.77131159IPR000571Zinc finger, CCCH-type
SMARTSM003566.7E-5131158IPR000571Zinc finger, CCCH-type
PfamPF006427.1E-8133157IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.2E-4136156IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.577231259IPR000571Zinc finger, CCCH-type
SMARTSM003563.3E-8232258IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.19E-7234260IPR000571Zinc finger, CCCH-type
PfamPF006421.7E-10234258IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.9E-7237259IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.7E-5277303IPR000571Zinc finger, CCCH-type
SMARTSM003561.2E-5278305IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.164278306IPR000571Zinc finger, CCCH-type
PfamPF006422.1E-7280304IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 390 aa     Download sequence    Send to blast
MSETQNSTES VRSSDKIEDT LTRVKVNEEN MEQSSPSPYP DRPGERDCQF FLRTGQCGYG  60
NSCRYNHPLS LFPQAVLYQR DELPERIGQP DCEYYLKTGA CKYGSTCKYH HPKDRNGAEP  120
VLFNVLGYPM RQGEKSCPYY MQTGMCKFGV ACKFHHPHPQ PHNGQSTTHG MSSFPYSMMS  180
LPPATYGVMP PPQVPHPQAY MPFMFAPPQG WSPYMAGSNP IYNVKTQPDS SSERAECRFY  240
MNTGTCKYGD DCKYSHPKER MLQSPPNLSH HIVLLPARPG QPACGNFKAY GFCKYGPNCK  300
YDHPSSPVST QPRSSTPPSR CDSTAISNGD KPGSENNSSE VEKQDEDISD KSEVQESSQL  360
SGSDSTAISN ESPSSETEKQ EDNGSQPDN*
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00132243001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013625934.10.0PREDICTED: zinc finger CCCH domain-containing protein 26-like
SwissprotO487720.0C3H26_ARATH; Zinc finger CCCH domain-containing protein 26
TrEMBLA0A3P6AMJ90.0A0A3P6AMJ9_BRAOL; Uncharacterized protein
STRINGBo3g027010.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM23802675
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G32930.10.0zinc finger nuclease 2
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]