PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00132524001

Common Name

GSBRNA2T00132524001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

NF-YB

Protein Properties

Length: 223aa MW: 24355.5 Da PI: 8.9803

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00132524001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	177.5	1.2e-55	75	169	1	95
NF-YB 1 vreqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkky 90 vreqdrflPian+srimk+ lPan+ki+kdake+vqecvsefisf+tseasdkcqrekrktingddllwa+atlGfedy++plkvyl++y GSBRNA2T00132524001 75 VREQDRFLPIANISRIMKRGLPANGKIAKDAKEIVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDYIDPLKVYLTRY 164 69**************************************************************************************** PP NF-YB 91 releg 95 re ++ GSBRNA2T00132524001 165 REGDT 169 *9665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	1.5E-52	71	191	IPR009072	Histone-fold
SuperFamily	SSF47113	2.64E-39	78	184	IPR009072	Histone-fold
Pfam	PF00808	3.4E-27	81	145	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
PRINTS	PR00615	2.0E-20	109	127	No hit	No description
PROSITE pattern	PS00685	0	112	128	IPR003956	Transcription factor, NFYB/HAP3, conserved site
PRINTS	PR00615	2.0E-20	128	146	No hit	No description
PRINTS	PR00615	2.0E-20	147	165	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0043565	Molecular Function	sequence-specific DNA binding
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 223 aa Download sequence Send to blast
MTRQCRCPNA FQISSLQRPI NLSSQHPCFL LQSTPLYFTP APFFRILLLM AESQAKSPGG 60 GESGGDQSPR SSSHVREQDR FLPIANISRI MKRGLPANGK IAKDAKEIVQ ECVSEFISFI 120 TSEASDKCQR EKRKTINGDD LLWAMATLGF EDYIDPLKVY LTRYREGDTK GSAKGGDANA 180 KKGGQSSQNG QFSQLAHQGS FSQGPYGSSQ GQHMMVPMPG TD*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4g91_B	4e-46	75	166	1	92	Transcription factor HapC (Eurofung)
4g92_B	4e-46	75	166	1	92	Transcription factor HapC (Eurofung)
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Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in flowers and mature rosettes. {ECO:0000269\|PubMed:11250072}.

Functional Description ? help Back to Top
Source	Description
UniProt	Component of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00132524001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK353083	1e-157	AK353083.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-13-K14.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013625677.1	1e-123	PREDICTED: nuclear transcription factor Y subunit B-8
Refseq	XP_013625678.1	1e-123	PREDICTED: nuclear transcription factor Y subunit B-8
Refseq	XP_013688891.1	1e-123	nuclear transcription factor Y subunit B-8
Refseq	XP_013688893.1	1e-123	nuclear transcription factor Y subunit B-8
Refseq	XP_022571261.1	1e-123	nuclear transcription factor Y subunit B-8-like
Refseq	XP_022571262.1	1e-123	nuclear transcription factor Y subunit B-8-like
Swissprot	Q8VYK4	1e-104	NFYB8_ARATH; Nuclear transcription factor Y subunit B-8
TrEMBL	A0A0D3B5C3	1e-138	A0A0D3B5C3_BRAOL; Uncharacterized protein
STRING	Bo3g031490.1	1e-139	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1480	27	94

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G37060.3	2e-86	nuclear factor Y, subunit B8

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293] Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722]