PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00132586001
Common NameGSBRNA2T00132586001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family MYB_related
Protein Properties Length: 290aa    MW: 32520.4 Da    PI: 4.5792
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00132586001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding32.22.5e-102879347
                         SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.......TTS-HHHHHHHHHHH CS
      Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmg.......kgRtlkqcksrwqky 47
                         +W t E++ll++avk++G  +W+++a+++          +++ +c+++++++
  GSBRNA2T00132586001 28 AWGTCEELLLACAVKRHGFCDWDSVAAEVRtrtslssVFLSADDCRHKYRDL 79
                         799***************************9988888888999999999876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007178.5E-52582IPR001005SANT/Myb domain
SuperFamilySSF466897.71E-62682IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.606.0E-52782IPR009057Homeodomain-like
PfamPF002499.4E-102879IPR001005SANT/Myb domain
CDDcd001671.04E-63379No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 290 aa     Download sequence    Send to blast
MNDICSNDHN IDDNNNNNTN LKQHEGRAWG TCEELLLACA VKRHGFCDWD SVAAEVRTRT  60
SLSSVFLSAD DCRHKYRDLQ RRFKESADGD NDATAEEEGG NDIPWLEELR SLRVAELRRE  120
VEQYDVSILS LQLKVKKLEE ERDGGEKLDL VEEGERKGER SENDGGEKAE ESERENRSMN  180
ESNSTGSGEK TVGEDEPGQT RGDDVDPDPV NAAEEGSGAS DSGELGESGT SGRKWKRKRR  240
KDSDGEIRSA ASESQPLIRL LDLIRSHPRG SLFERRVRSQ VCKYLIFFI*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1232240RKWKRKRRK
2232241RKWKRKRRKD
3235240KRKRRK
4236241RKRRKD
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.255620.0flower| root
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00132586001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009143023.10.0PREDICTED: serine/threonine-protein kinase PRP4 homolog
TrEMBLA0A3P5ZBY30.0A0A3P5ZBY3_BRACM; Uncharacterized protein
TrEMBLM4CKU50.0M4CKU5_BRARP; Uncharacterized protein
STRINGBra004831.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM41231947
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44430.19e-87DNA-binding bromodomain-containing protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]