PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00132735001
Common NameGSBRNA2T00132735001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family bHLH
Protein Properties Length: 303aa    MW: 33650.7 Da    PI: 6.5158
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00132735001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH27.55.6e-09170217455
                          HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          +h+ +Er RR++iN ++  L+el+P +    +k    a +L + +++++sLq
  GSBRNA2T00132735001 170 NHSLAERARREKINARMKLLQELVPGC----DKIQGTALVLDEIINHVQSLQ 217
                          79************************9....889****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000833.88E-9164221No hitNo description
SuperFamilySSF474591.28E-15164235IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.634166216IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.3E-15166234IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.3E-6170217IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.9E-8172222IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 303 aa     Download sequence    Send to blast
MFGVSSGAGP YRESPMTGLE SLNFIDEIQQ LAATFPPENT GSFTALLEMP ATQAVELFTS  60
SSQAAGNTAP PTLHPLRRLN FPPDLAAVIA AEQNGNFSGE SSSFGIRVKS EPEETDSSQR  120
FVSNQNHNKR KERGKKKVKS SMKKSKSSDE EAEKLPYVHV RARRGQATDN HSLAERARRE  180
KINARMKLLQ ELVPGCDKIQ GTALVLDEII NHVQSLQHQV EMLSMRLAAV NPRIDFNLDS  240
LLASQNSFIM DGSFTGEFHH QLQQWPLDGY HQTEWGREED HHEASFLMGS ATLHPNQVKM  300
EL*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in leaves, stems, and flowers. {ECO:0000269|PubMed:12679534}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00132735001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1553370.0AC155337.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH117N09, complete sequence.
GenBankAC1892200.0AC189220.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB010H06, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013747778.10.0transcription factor bHLH48-like isoform X1
SwissprotQ8VZ021e-133BH048_ARATH; Transcription factor bHLH48
TrEMBLM4CKE40.0M4CKE4_BRARP; Uncharacterized protein
STRINGBra004679.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM25762771
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42300.11e-124bHLH family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  3. Li Y,Wang H,Li X,Liang G,Yu D
    Two DELLA-interacting proteins bHLH48 and bHLH60 regulate flowering under long-day conditions in Arabidopsis thaliana.
    J. Exp. Bot., 2017. 68(11): p. 2757-2767
    [PMID:28591805]