PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00132849001
Common NameGSBRNA2T00132849001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family NAC
Protein Properties Length: 314aa    MW: 36077.3 Da    PI: 8.5721
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00132849001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM706.4e-221032302128
                  NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvka...eekewyfFskrdkkyat.gkrknratksgyWkatg 87 
                          ppG rF Pt+   +  +L++kv++kk      i+++d+y+ +Pw L+ +v++    + ewy+F++r+k+ at  +r+ r    g+Wk+t 
  GSBRNA2T00132849001 103 PPGSRFLPTNLGCLRVHLRNKVDKKKSGS---ITTLDLYEDDPWLLD-HVQNdlfPRGEWYYFTPRNKRGATsCTRTVRGRGGGTWKTTS 188
                          9************************9555...9*************8.3433233445*********999874689999999******** PP

                  NAM  88 kdkevlskkgelvglkktLvfykg.rapkgektdWvmheyrl 128
                           ++++++k++++ g  ++Lv+ k   + + + t W m+ey l
  GSBRNA2T00132849001 189 GKEPIKDKNNKVEGYVQSLVYNKTdVNGDIKPTGWNMKEYCL 230
                          *********************97624445568********86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.66E-2897244IPR003441NAC domain
PROSITE profilePS5100530.507102246IPR003441NAC domain
PfamPF023651.9E-13103230IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 314 aa     Download sequence    Send to blast
MNGDQSKSKV DESSSKSNYV LGREEGSSSS SHTRVNNNLR EQQRLMMLRS PGMPRTHPAF  60
KQHVNHMYNL EEHQRRMLHY HRMPHTDHPS SSSIDTVKAR VYPPGSRFLP TNLGCLRVHL  120
RNKVDKKKSG SITTLDLYED DPWLLDHVQN DLFPRGEWYY FTPRNKRGAT SCTRTVRGRG  180
GGTWKTTSGK EPIKDKNNKV EGYVQSLVYN KTDVNGDIKP TGWNMKEYCL YEENQDDLVL  240
CRLKGNLEKK GFAEEVKNNI LSKQVQEEQE AGANRVDEMR TLEEDHGEAT QQKQEQDAPR  300
VLVPSPHEDL VLW*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A3e-1310324316165Stress-induced transcription factor NAC1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00132849001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022556272.11e-149NAC domain-containing protein 6-like
TrEMBLA0A3P5YQR20.0A0A3P5YQR2_BRACM; Uncharacterized protein
STRINGBra004575.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM14026919
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G03490.17e-23NAC domain containing protein 6
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]