PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00132935001

Common Name

GSBRNA2T00132935001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

bHLH

Protein Properties

Length: 314aa MW: 36048.1 Da PI: 8.6018

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00132935001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	37.4	4.5e-12	153	203	1	54
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 +r++h +Er+RR+++N ++ Lr+l+P++ + + + a+i+ A++++k L GSBRNA2T00132935001 153 QRMTHITVERNRRRQMNVYLSSLRSLIPSS---YILRGDQASIVGGAIDFVKLL 203 79**************************...9**************9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	7.46E-15	144	213	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	4.39E-8	151	201	No hit	No description
Gene3D	G3DSA:4.10.280.10	6.4E-12	151	208	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	14.303	152	203	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	5.1E-9	153	203	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	5.1E-8	158	209	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 314 aa Download sequence Send to blast
MEEKIQGQNK LSVSSLDQKV IVRRSLQVQG SSEDQRFVLE EDMMQQSEDL SSVLSVKDPN 60 FLRLLSLQTL QKPWELGDYL PHEVPEFHSP TNYYHQNPSL ERVNEAISSQ ELQLNPLRKR 120 RNNNNLVAAS VSREKRKRKR TKPTKDTEEM ESQRMTHITV ERNRRRQMNV YLSSLRSLIP 180 SSYILRGDQA SIVGGAIDFV KLLEQQLQLL EAQKVTQQTD TKDISLEQSS KLRIDATVIE 240 SHVNLKIQCP KKQGQLLRSI IWLEKLRFTV LHLNVTSPCN ATVSYSFNLK MEEDCTLTSA 300 DEITAAVRQI LDC*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	118	139	KRRNNNNLVAASVSREKRKRKR
2	135	142	RKRKRTKP
3	153	164	RMTHITVERNRR

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Bna.23094	0.0	flower\| seed

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. {ECO:0000269\|PubMed:12679534}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00132935001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013747589.1	0.0	transcription factor bHLH70-like isoform X1
Swissprot	O81037	1e-139	BH070_ARATH; Transcription factor bHLH70
TrEMBL	A0A397Z5W8	0.0	A0A397Z5W8_BRACM; Uncharacterized protein
STRING	Bo4g006950.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3119	26	66

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G46810.1	1e-124	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]